Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 3.4e-243 844.7 484 100.0
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 4.8e-168 595.1 481 76.3
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.4e-164 583.6 622 62.9
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 2.1e-147 526.6 482 69.1
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-146 524.2 491 66.8
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 7.6e-142 508.1 489 63.4
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 2.2e-141 506.5 496 66.1
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 2.2e-141 506.5 422 71.3
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.4e-138 497.3 491 64.0
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 5.7e-137 491.9 666 52.7
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.4e-135 487.3 488 64.3
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 9.1e-135 484.6 491 65.2
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.6e-134 483.0 493 66.1
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 5.9e-134 481.9 423 71.2
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.7e-133 480.3 422 68.7
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 9.4e-132 474.6 422 68.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 2.1e-131 473.4 503 61.2
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 3.6e-131 472.6 484 65.7
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 6.1e-131 471.9 500 65.2
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 3.9e-130 469.2 419 66.6
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 3.9e-130 469.2 424 67.9
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 2.2e-128 463.4 484 62.8
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.8e-128 463.0 420 66.9
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 3.7e-128 462.6 482 60.4
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.7e-128 462.6 422 67.1
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.7e-128 462.6 422 64.9
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.3e-128 461.8 422 67.1
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.4e-127 459.9 381 74.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 3.1e-127 459.5 420 66.7
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 7.0e-127 458.4 422 66.8
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.2e-126 457.6 486 63.2
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.2e-126 457.6 422 66.1
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 1.2e-126 457.6 483 64.8
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 3.4e-126 456.1 429 63.9
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 5.9e-126 455.3 484 62.8
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 7.7e-126 454.9 436 64.2
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.0e-125 454.5 524 58.2
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 2.2e-125 453.4 480 60.4
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 2.2e-125 453.4 456 65.6
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 2.9e-125 453.0 493 60.4
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 5.5e-124 448.7 480 61.2
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 5.5e-124 448.7 426 66.0
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 5.5e-124 448.7 425 66.8
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 5.5e-124 448.7 487 62.0
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.2e-124 448.4 486 60.7
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 9.4e-124 448.0 494 62.8
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.8e-122 443.7 423 65.0
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 2.0e-121 440.3 484 59.3
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 2.4e-119 433.3 426 65.0
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.4e-119 433.3 419 65.2
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.2e-118 431.0 442 64.0
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.2e-117 426.8 423 64.1
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 5.0e-117 425.6 420 62.4
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 8.5e-117 424.9 422 64.7
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.9e-116 423.7 428 62.6
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.5e-116 423.3 422 64.0
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 4.2e-116 422.5 426 62.7
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 4.0e-114 416.0 392 66.6
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 6.7e-114 415.2 483 59.4
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 2.6e-113 413.3 488 57.2
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 2.6e-113 413.3 415 62.4
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 5.7e-113 412.1 490 57.8
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 2.8e-112 409.8 486 56.8
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 3.7e-112 409.5 425 59.5
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.7e-112 409.5 408 64.0
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.1e-111 407.9 432 60.2
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 4.1e-111 406.0 487 58.3
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 4.1e-111 406.0 426 62.0
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 5.3e-111 405.6 498 54.2
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 7.0e-111 405.2 483 59.2
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 9.1e-111 404.8 487 59.8
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-110 403.3 489 57.7
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 1.5e-108 397.5 488 55.5
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.5e-108 396.7 500 54.8
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.5e-108 396.7 500 54.8
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.2e-107 394.4 422 57.1
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 3.0e-106 389.8 424 60.1
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 3.0e-106 389.8 421 58.4
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 6.8e-106 388.7 491 57.0
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 7.5e-105 385.2 489 56.2
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.7e-104 384.0 487 58.1
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 8.3e-104 381.7 431 55.0
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.1e-103 381.3 419 59.9
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 2.4e-103 380.2 425 58.6
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 4.1e-103 379.4 432 55.8
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 6.6e-101 372.1 424 58.5
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 8.0e-99 365.2 413 58.8
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 9.8e-97 358.2 480 54.8
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.5e-92 344.4 370 58.9
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 3.3e-92 343.2 420 53.8
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 7.3e-92 342.0 384 56.5
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.0e-90 336.3 294 69.0
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.3e-88 331.3 431 51.5
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.3e-88 331.3 431 51.5
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 1.4e-87 327.8 297 71.0
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 2.1e-83 313.9 432 48.8
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 4.7e-83 312.8 322 62.7
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.4e-82 311.2 390 56.4
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 6.4e-80 302.4 464 48.1
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.2e-78 298.1 295 66.8
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.0e-77 295.0 293 62.8
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 9.5e-76 288.5 286 66.4
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-75 287.0 485 48.9
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.5e-73 281.2 287 63.4
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 4.9e-72 276.2 296 62.2
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 4.1e-71 273.1 421 47.3
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 1.6e-67 261.2 327 53.8
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 9.9e-65 251.9 189 73.0
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.9e-64 250.4 355 45.4
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 3.3e-60 236.9 388 46.1
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-56 223.4 427 44.7
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.2e-54 218.4 336 45.5
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 3.0e-53 213.8 259 61.0
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-48 198.4 372 46.0
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 4.3e-44 183.3 460 37.0
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 2.7e-38 164.1 99 84.8
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 2.1e-35 154.5 103 82.5
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 5.8e-33 146.4 205 48.3
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.2e-32 144.4 179 58.7
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.0e-29 135.6 387 31.3
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.8e-29 134.8 119 68.9
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 3.9e-29 133.7 87 85.1
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-27 127.5 325 39.1
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 8.5e-24 115.9 88 70.5
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.5e-23 113.2 63 85.7
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 2.1e-22 111.3 96 66.7
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.7e-19 100.5 83 69.9
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 5.3e-18 96.7 94 59.6
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.0e-17 94.7 83 61.4
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 7.9e-14 82.8 173 41.0
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.0e-13 80.9 64 70.3
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-12 79.0 96 57.3
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 4.5e-09 67.0 159 30.8
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-08 65.9 88 48.9
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 5.0e-08 63.5 92 46.7
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 5.0e-08 63.5 43 72.1
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.6e-06 58.5 39 76.9


User provided reference genes

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