Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 9.3e-139 496.9 254 100.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.4e-16 89.7 239 28.5
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.7e-15 87.4 245 28.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 6.4e-15 85.5 246 29.7
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 8.4e-15 85.1 241 27.4
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 8.4e-15 85.1 245 29.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 8.4e-15 85.1 241 29.0
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.1e-14 84.7 239 28.5
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.4e-14 84.3 239 29.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.9e-14 84.0 240 28.8
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 2.4e-14 83.6 239 27.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.4e-14 83.6 245 31.8
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.4e-14 83.6 241 30.3
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.4e-14 83.6 245 28.2
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.2e-14 83.2 236 28.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 3.2e-14 83.2 237 28.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.2e-14 82.8 246 28.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.4e-14 82.4 239 29.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 5.4e-14 82.4 247 27.5
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.4e-14 82.4 245 30.6
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 5.4e-14 82.4 238 27.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.4e-14 82.4 246 29.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.1e-14 82.0 238 28.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 7.1e-14 82.0 237 28.7
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 7.1e-14 82.0 239 28.9
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 7.1e-14 82.0 244 28.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 9.3e-14 81.6 252 27.4
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.2e-13 81.3 240 28.8
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.2e-13 81.3 242 29.3
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.6e-13 80.9 244 27.9
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.1e-13 80.5 248 29.0
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.1e-13 80.5 248 29.0
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.1e-13 80.5 246 27.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 2.1e-13 80.5 250 28.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.7e-13 80.1 248 29.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.7e-13 80.1 241 29.5
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.7e-13 80.1 235 29.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.7e-13 80.1 235 29.8
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.7e-13 80.1 235 29.8
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.7e-13 80.1 240 28.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.7e-13 80.1 241 28.2
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.5e-13 79.7 246 28.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-13 79.7 235 29.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.5e-13 79.7 237 27.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 4.6e-13 79.3 241 28.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.0e-13 79.0 241 29.5
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 6.0e-13 79.0 250 28.4
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 6.0e-13 79.0 236 26.7
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 6.0e-13 79.0 242 29.3
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 6.0e-13 79.0 191 30.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 6.0e-13 79.0 245 28.2
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 6.0e-13 79.0 233 28.8
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 7.9e-13 78.6 238 28.6
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 7.9e-13 78.6 236 27.5
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.9e-13 78.6 237 27.4
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 7.9e-13 78.6 239 28.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.0e-12 78.2 241 28.2
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.0e-12 78.2 247 28.7
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.3e-12 77.8 233 27.5
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.3e-12 77.8 243 30.5
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-12 77.8 236 27.5
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.3e-12 77.8 241 27.4
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.3e-12 77.8 241 28.2
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.8e-12 77.4 245 26.1
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.8e-12 77.4 245 28.2
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.8e-12 77.4 241 26.6
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 2.3e-12 77.0 250 28.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.3e-12 77.0 243 30.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.3e-12 77.0 240 27.5
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 2.3e-12 77.0 241 28.2
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.3e-12 77.0 245 28.2
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.0e-12 76.6 237 27.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.0e-12 76.6 241 27.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.9e-12 76.3 245 25.7
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.9e-12 76.3 243 30.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.1e-12 75.9 244 28.3
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 5.1e-12 75.9 244 27.9
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 5.1e-12 75.9 237 26.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 5.1e-12 75.9 243 29.6
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 5.1e-12 75.9 238 28.6
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 6.7e-12 75.5 233 27.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 6.7e-12 75.5 233 27.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 6.7e-12 75.5 233 27.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 6.7e-12 75.5 233 27.0
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 8.7e-12 75.1 245 27.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-11 74.7 254 26.8
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.1e-11 74.7 240 26.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.1e-11 74.7 244 27.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.1e-11 74.7 241 27.8
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.5e-11 74.3 199 28.1
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.5e-11 74.3 209 27.8
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.5e-11 74.3 241 29.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.5e-11 74.3 241 29.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.9e-11 73.9 248 27.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-11 73.9 258 28.7
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.5e-11 73.6 248 26.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 3.3e-11 73.2 238 26.9
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.3e-11 72.8 243 28.8
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.3e-11 72.8 237 27.4
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.3e-11 72.8 245 27.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 5.6e-11 72.4 239 26.4
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.4e-11 72.0 195 27.7
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 9.6e-11 71.6 244 26.6
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 9.6e-11 71.6 195 28.7
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 9.6e-11 71.6 191 31.9
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 9.6e-11 71.6 259 26.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 9.6e-11 71.6 245 26.9
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 9.6e-11 71.6 245 26.9
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-10 71.2 191 31.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.3e-10 71.2 241 27.4
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.6e-10 70.9 237 26.6
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.8e-10 70.1 140 32.9
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 3.6e-10 69.7 254 27.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 4.8e-10 69.3 195 27.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 4.8e-10 69.3 194 30.4
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.4e-09 67.8 229 27.5
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.4e-09 67.8 138 35.5
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.4e-09 67.0 103 38.8
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 5.3e-09 65.9 121 36.4
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 6.9e-09 65.5 103 37.9
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.0e-09 65.1 187 28.9
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.2e-08 64.7 189 29.1
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.2e-08 64.7 103 36.9
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.6e-08 63.5 102 36.3
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.4e-08 63.2 191 28.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 9.9e-08 61.6 103 37.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.7e-07 60.8 105 35.2


User provided reference genes

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