Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022187 Carpinus fangiana HOM05D003516 ORTHO05D004068 0.0e+00 1246.9 640 100.0
Cre06.g277100 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 8.5e-32 142.9 394 28.7
MCO12G151 Micromonas commoda HOM05D003516 ORTHO05D004068 3.7e-27 127.5 386 27.7
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 7.3e-23 113.2 418 28.7
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 3.0e-21 107.8 125 44.8
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 5.2e-21 107.1 340 28.2
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 1.5e-20 105.5 323 30.3
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 2.0e-20 105.1 425 27.8
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 3.4e-20 104.4 418 28.7
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 3.4e-20 104.4 118 43.2
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 9.8e-20 102.8 422 28.9
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 9.8e-20 102.8 125 41.6
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 9.8e-20 102.8 416 27.9
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 1.3e-19 102.4 118 44.1
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 1.3e-19 102.4 118 44.1
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 1.7e-19 102.1 418 27.5
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 2.2e-19 101.7 321 29.3
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 2.9e-19 101.3 329 29.2
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 2.9e-19 101.3 158 38.0
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 3.7e-19 100.9 417 26.9
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 3.7e-19 100.9 143 37.8
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 8.3e-19 99.8 126 40.5
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 8.3e-19 99.8 273 30.0
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.1e-18 99.4 146 37.7
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.1e-18 99.4 413 27.8
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.1e-18 99.4 422 26.5
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 1.8e-18 98.6 324 28.1
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 1.8e-18 98.6 143 37.1
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 2.4e-18 98.2 415 27.2
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 2.4e-18 98.2 332 29.5
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 3.2e-18 97.8 328 29.0
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 3.2e-18 97.8 411 27.3
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 3.2e-18 97.8 118 44.1
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 3.2e-18 97.8 143 35.7
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 3.2e-18 97.8 143 35.7
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.1e-18 97.4 193 34.2
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 4.1e-18 97.4 150 37.3
Solyc02g088510.4 Solanum lycopersicum HOM05D003516 ORTHO05D004068 4.1e-18 97.4 187 33.2
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 5.4e-18 97.1 393 27.0
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 5.4e-18 97.1 412 27.7
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 5.4e-18 97.1 402 26.9
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 7.0e-18 96.7 118 43.2
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 9.2e-18 96.3 194 32.5
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 9.2e-18 96.3 399 28.1
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 9.2e-18 96.3 115 39.1
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 1.2e-17 95.9 118 39.8
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-17 95.9 411 26.5
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.2e-17 95.9 115 40.9
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.6e-17 95.5 118 44.9
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 1.6e-17 95.5 423 26.7
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 1.6e-17 95.5 147 38.8
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 2.0e-17 95.1 192 33.3
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 2.0e-17 95.1 115 39.1
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 2.0e-17 95.1 118 39.8
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 2.7e-17 94.7 409 26.4
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 2.7e-17 94.7 118 41.5
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 2.7e-17 94.7 143 35.0
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 2.7e-17 94.7 192 33.3
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 2.7e-17 94.7 126 37.3
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 2.7e-17 94.7 332 28.9
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.7e-17 94.7 115 39.1
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 2.7e-17 94.7 192 34.9
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.5e-17 94.4 324 30.2
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 3.5e-17 94.4 327 27.2
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 3.5e-17 94.4 330 28.8
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 3.5e-17 94.4 185 32.4
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 3.5e-17 94.4 194 32.0
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 4.6e-17 94.0 116 38.8
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 4.6e-17 94.0 117 41.0
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 4.6e-17 94.0 117 42.7
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 5.9e-17 93.6 119 37.8
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 5.9e-17 93.6 192 32.8
MCO09G694 Micromonas commoda HOM05D003516 ORTHO05D004068 5.9e-17 93.6 425 27.3
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 5.9e-17 93.6 117 41.0
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 5.9e-17 93.6 390 27.2
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 7.8e-17 93.2 115 39.1
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 7.8e-17 93.2 187 31.6
Nn4g23325 Nelumbo nucifera HOM05D003516 ORTHO05D004068 7.8e-17 93.2 118 39.0
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 1.0e-16 92.8 196 33.7
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 1.0e-16 92.8 119 37.8
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.0e-16 92.8 118 39.8
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 1.0e-16 92.8 185 31.9
Psat1g105320 Pisum sativum HOM05D003516 ORTHO05D004068 1.0e-16 92.8 118 39.0
Psat1g105360 Pisum sativum HOM05D003516 ORTHO05D004068 1.0e-16 92.8 118 39.0
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 1.3e-16 92.4 131 36.6
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 1.3e-16 92.4 118 37.3
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.3e-16 92.4 194 34.0
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 1.3e-16 92.4 323 27.9
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 1.7e-16 92.0 116 37.1
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 1.7e-16 92.0 115 37.4
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 1.7e-16 92.0 229 31.4
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.7e-16 92.0 191 29.8
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.7e-16 92.0 145 34.5
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 2.3e-16 91.7 423 25.3
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 2.3e-16 91.7 331 27.5
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.3e-16 91.7 191 32.5
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.0e-16 91.3 147 35.4
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 3.0e-16 91.3 132 40.2
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 3.9e-16 90.9 440 25.5
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 3.9e-16 90.9 325 28.9
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 3.9e-16 90.9 328 28.4
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 3.9e-16 90.9 332 28.6
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 5.0e-16 90.5 144 34.0
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 5.0e-16 90.5 414 26.1
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 5.0e-16 90.5 118 39.8
Lj4C115T4 Lonicera japonica HOM05D003516 ORTHO05D004068 5.0e-16 90.5 146 34.2
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 5.0e-16 90.5 116 39.7
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 5.0e-16 90.5 118 39.0
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 5.0e-16 90.5 118 40.7
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 6.6e-16 90.1 328 28.4
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 6.6e-16 90.1 328 28.4
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 6.6e-16 90.1 118 39.0
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 6.6e-16 90.1 146 37.7
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 6.6e-16 90.1 192 32.8
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 6.6e-16 90.1 423 25.5
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 8.6e-16 89.7 353 27.5
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 8.6e-16 89.7 328 28.0
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.1e-15 89.4 338 27.8
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.1e-15 89.4 416 26.7
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 1.1e-15 89.4 413 26.4
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 1.5e-15 89.0 328 27.4
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.5e-15 89.0 116 40.5
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 1.5e-15 89.0 144 36.8
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 1.5e-15 89.0 119 40.3
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.5e-15 89.0 146 33.6
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 1.9e-15 88.6 117 39.3
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 1.9e-15 88.6 122 36.9
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.3e-15 87.8 146 34.2
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 4.3e-15 87.4 118 37.3
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 4.3e-15 87.4 121 37.2
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 5.6e-15 87.0 400 25.2
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 5.6e-15 87.0 331 27.5
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 5.6e-15 87.0 115 38.3
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 5.6e-15 87.0 416 26.7
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 1.2e-14 85.9 318 27.0
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 1.2e-14 85.9 117 35.9
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 1.2e-14 85.9 418 25.1
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 1.6e-14 85.5 227 30.4
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.1e-14 85.1 328 27.4
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.6e-14 84.3 317 27.1
MCO13G548 Micromonas commoda HOM05D003516 ORTHO05D004068 3.6e-14 84.3 195 32.8
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 4.7e-14 84.0 325 27.1
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 6.2e-14 83.6 317 27.1
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 1.4e-13 82.4 113 38.9
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.3e-13 81.6 120 39.2
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 4.0e-13 80.9 230 29.6
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 5.8e-12 77.0 173 27.2
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 1.3e-11 75.9 366 24.0
Lsat_1_v5_gn_3_33981 Lactuca sativa HOM05D003516 ORTHO05D004068 2.2e-11 75.1 72 43.1
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 2.9e-11 74.7 274 29.2
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 2.9e-11 74.7 98 40.8
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 8.3e-11 73.2 131 33.6
Cre16.g678325 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 1.4e-10 72.4 123 29.3
Nitab4.5_0000053g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 9.2e-10 69.7 90 40.0
MCO15G445 Micromonas commoda HOM05D003516 ORTHO05D004068 4.6e-09 67.4 157 31.2
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 3.9e-08 64.3 193 29.0
CsaV3_3G041010 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.9e-07 62.0 68 39.7
Lsat_1_v5_gn_4_89441 Lactuca sativa HOM05D003516 ORTHO05D004068 2.5e-07 61.6 90 35.6
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 4.3e-07 60.8 316 24.7
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 4.3e-07 60.8 83 36.1
HanXRQChr17g0546741 Helianthus annuus HOM05D003516 ORTHO05D004068 7.3e-07 60.1 100 32.0
COL.COLO4_12253 Corchorus olitorius HOM05D003516 ORTHO05D004068 1.2e-06 59.3 74 44.6


User provided reference genes

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