Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 0.0e+00 5207.5 2740 100.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 3.4e-21 109.8 889 21.5
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 1.7e-20 107.5 710 21.1
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 2.5e-19 103.6 920 19.8
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 1.2e-18 101.3 1007 20.7
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 2.7e-18 100.1 842 20.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 2.7e-18 100.1 833 20.4
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 7.9e-18 98.6 1051 20.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 1.4e-17 97.8 718 21.4
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 1.8e-17 97.4 726 21.3
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 3.0e-17 96.7 808 21.2
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 3.0e-17 96.7 723 21.4
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 3.9e-17 96.3 1059 21.2
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 5.1e-17 95.9 719 20.7
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 2.5e-16 93.6 829 21.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 5.7e-16 92.4 714 21.7
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 7.4e-16 92.0 416 24.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 6.3e-15 89.0 837 22.1
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 1.4e-14 87.8 432 23.8
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 2.4e-14 87.0 700 19.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 3.1e-14 86.7 384 22.9
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 9.1e-14 85.1 988 20.2
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.2e-13 84.7 384 23.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 1.5e-13 84.3 869 20.3
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 4.5e-13 82.8 425 22.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 4.5e-13 82.8 425 22.6
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 5.9e-13 82.4 387 23.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 5.9e-13 82.4 407 24.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 1.0e-12 81.6 383 23.2
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 1.7e-12 80.9 769 19.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 1.7e-12 80.9 767 20.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 2.9e-12 80.1 621 20.3
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 2.9e-12 80.1 422 23.5
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 5.0e-12 79.3 425 21.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 5.0e-12 79.3 425 21.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 1.4e-11 77.8 337 22.6
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 2.5e-11 77.0 443 24.6
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 4.2e-11 76.3 337 22.6
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.2e-11 76.3 338 24.6
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 4.2e-11 76.3 423 23.2
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 4.2e-11 76.3 385 23.1
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 5.5e-11 75.9 339 24.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 7.2e-11 75.5 338 24.6
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 9.4e-11 75.1 338 22.8
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 1.6e-10 74.3 338 24.6
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 2.1e-10 73.9 413 23.2
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 2.1e-10 73.9 400 22.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 2.7e-10 73.6 338 24.9
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 2.7e-10 73.6 341 23.5
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 2.7e-10 73.6 382 23.6
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 3.6e-10 73.2 340 24.1
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 4.7e-10 72.8 338 22.8
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.9e-10 72.0 340 24.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 7.9e-10 72.0 454 21.1
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 1.0e-09 71.6 466 23.4
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 1.4e-09 71.2 339 24.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 1.8e-09 70.9 341 24.6
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.8e-09 70.9 311 24.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 3.0e-09 70.1 470 23.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 3.0e-09 70.1 340 22.9
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 3.0e-09 70.1 458 21.8
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 3.9e-09 69.7 339 23.9
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 5.1e-09 69.3 334 22.2
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 5.1e-09 69.3 338 23.1
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 6.7e-09 68.9 354 23.7
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.0e-08 67.4 563 21.0
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 2.6e-08 67.0 386 22.5
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 4.4e-08 66.2 337 22.8
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 5.7e-08 65.9 338 23.4
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.2e-07 63.9 338 23.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 2.8e-07 63.5 338 22.8
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 3.7e-07 63.2 570 20.2
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 3.7e-07 63.2 570 20.2
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 4.8e-07 62.8 480 20.4
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 4.8e-07 62.8 338 21.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 8.2e-07 62.0 608 19.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 1.1e-06 61.6 183 29.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 1.4e-06 61.2 338 21.3
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.4e-06 61.2 338 22.8
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 4.1e-06 59.7 565 20.0
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 6.9e-06 58.9 105 32.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 6.9e-06 58.9 219 23.3


User provided reference genes

Program Settings