Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.4e-89 331.6 169 100.0
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.0e-85 320.1 165 98.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.1e-77 291.2 167 86.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.5e-76 288.9 167 85.0
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.4e-73 278.5 167 83.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 5.0e-72 274.6 166 79.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.5e-71 271.2 165 82.4
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.7e-70 268.9 165 79.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.0e-69 266.9 165 78.8
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.0e-69 265.4 165 78.2
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-68 263.1 165 81.2
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.0e-68 262.7 165 78.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 9.7e-68 260.4 166 74.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-67 259.6 167 74.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.7e-67 259.6 165 78.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.8e-67 258.1 167 75.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 6.3e-67 257.7 165 77.0
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 6.3e-67 257.7 166 75.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 8.2e-67 257.3 167 77.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-66 256.9 165 77.6
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-66 256.1 165 78.2
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-66 256.1 165 78.2
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.8e-66 256.1 165 77.0
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 5.3e-66 254.6 166 75.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 9.1e-66 253.8 165 77.0
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 5.9e-65 251.1 166 76.5
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.2e-64 249.2 165 73.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.9e-64 248.8 164 74.4
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 5.0e-64 248.1 166 75.3
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.9e-63 246.1 164 75.0
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.2e-63 245.0 166 74.7
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 5.5e-63 244.6 166 71.7
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.2e-63 244.2 164 73.8
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.6e-62 243.0 165 73.3
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.7e-62 242.3 163 78.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 6.1e-62 241.1 165 74.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.0e-61 240.4 163 77.3
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.4e-61 240.0 165 69.7
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.4e-61 240.0 163 71.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.8e-61 239.6 165 72.1
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-61 239.6 163 71.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.3e-61 239.2 165 68.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.3e-61 239.2 165 72.1
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.3e-61 239.2 163 71.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.3e-61 239.2 169 73.4
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.2e-61 238.0 165 72.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.2e-61 238.0 163 71.8
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.2e-61 238.0 156 79.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 6.7e-61 237.7 163 74.8
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.7e-61 237.7 158 74.7
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.8e-61 237.3 164 70.7
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 5.7e-60 234.6 163 70.6
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.8e-59 231.5 164 72.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 8.2e-59 230.7 165 69.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.1e-58 230.3 166 70.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.4e-58 229.9 165 68.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.4e-58 229.2 165 66.1
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.1e-58 228.8 167 70.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.1e-58 227.3 164 74.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.0e-57 226.1 164 74.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 4.5e-57 224.9 164 74.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.9e-57 224.6 165 66.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 5.9e-57 224.6 164 75.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.7e-57 224.2 164 73.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.0e-56 223.8 164 73.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.3e-56 223.4 164 73.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.3e-56 223.4 164 73.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.7e-56 223.0 166 67.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.2e-56 222.6 164 67.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 3.8e-56 221.9 165 65.5
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.5e-56 220.7 165 64.2
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.5e-55 219.9 166 67.5
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-55 219.9 167 66.5
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.5e-55 219.9 166 69.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.2e-55 218.8 166 68.1
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.2e-55 218.8 164 73.8
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.2e-55 218.8 172 68.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.2e-55 218.8 174 63.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.2e-55 218.4 167 65.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.4e-55 217.2 165 63.6
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 9.4e-55 217.2 164 65.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.6e-54 215.3 158 69.6
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.1e-54 214.5 167 64.7
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.3e-53 212.6 169 64.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.0e-53 212.2 165 64.2
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.0e-53 212.2 166 63.9
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 5.2e-53 211.5 158 67.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 8.8e-53 210.7 170 63.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.6e-52 209.1 158 67.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-52 208.8 166 63.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 9.7e-52 207.2 166 65.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.7e-51 206.5 165 66.1
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.2e-51 206.1 170 63.5
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.7e-51 205.3 170 63.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.3e-51 204.5 163 65.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 8.3e-51 204.1 167 64.1
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.3e-51 204.1 172 62.2
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 64.1
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.1e-50 203.8 168 61.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.4e-50 203.4 166 62.7
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.8e-50 203.0 170 62.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.8e-50 203.0 170 62.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.4e-50 202.6 170 62.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-50 201.8 170 62.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 7.0e-50 201.1 131 74.0
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-49 199.9 165 64.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 6.5e-48 194.5 165 60.0
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.1e-47 193.7 131 73.3
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-46 189.9 167 59.9
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 3.6e-46 188.7 125 72.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 3.0e-45 185.7 169 59.2
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 3.0e-45 185.7 169 59.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.4e-42 176.8 127 77.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.1e-42 175.3 168 57.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.1e-42 175.3 136 66.9
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 4.1e-42 175.3 159 58.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.4e-42 174.9 162 58.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-41 172.6 168 57.1
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-41 172.6 168 57.1
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.5e-41 172.2 124 66.9
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.8e-40 168.7 165 55.8
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-39 167.2 128 66.4
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.5e-39 166.0 165 53.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.5e-36 156.8 130 62.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.1e-34 150.6 124 62.1
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.8e-34 149.8 115 64.3
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 3.1e-34 149.1 174 51.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.7e-33 146.0 136 52.2
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 5.9e-33 144.8 129 58.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.3e-32 143.7 100 66.0
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.9e-32 142.5 170 45.9
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.6e-32 141.0 124 58.1
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.1e-31 140.6 180 49.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.5e-31 139.4 158 48.1
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-30 137.1 155 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.8e-29 133.3 161 48.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.5e-28 127.9 78 76.9
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.4e-27 124.8 89 68.5
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.9e-26 123.2 133 47.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 7.8e-25 117.9 121 45.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.5e-23 113.6 66 80.3
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 4.3e-23 112.1 159 38.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.6e-23 111.7 163 44.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 3.4e-20 102.4 149 42.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.8e-20 100.9 57 91.2
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.8e-20 100.9 57 91.2
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.8e-20 100.9 61 85.2
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.9e-19 98.6 72 61.1
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.1e-18 95.5 53 92.5
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.7e-17 92.8 68 72.1
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-16 90.5 61 77.0
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.0e-16 89.4 66 72.7
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 4.3e-15 85.5 63 58.7
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-14 83.6 64 67.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.8e-14 82.8 76 48.7
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.3e-13 79.7 62 62.9
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.0e-12 76.6 80 53.8
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.9e-12 74.3 44 72.7
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.9e-11 72.8 81 53.1
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.2e-10 69.3 98 41.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.1e-10 68.9 60 63.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.2e-10 67.8 89 51.7
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.6e-09 67.0 63 46.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.5e-09 65.9 117 41.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.3e-08 63.2 120 35.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 9.5e-07 57.8 105 34.3
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.2e-06 57.4 55 41.8


User provided reference genes

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