Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.0e-63 245.7 134 100.0
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 6.0e-12 74.7 123 36.6
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 6.0e-12 74.7 123 36.6
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.0e-11 73.9 126 34.9
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 2.3e-11 72.8 120 35.0
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 3.9e-11 72.0 123 35.8
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 5.1e-11 71.6 123 34.1
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 6.6e-11 71.2 121 33.9
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 6.6e-11 71.2 123 35.0
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 6.6e-11 71.2 123 34.1
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 6.6e-11 71.2 123 35.0
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 6.6e-11 71.2 123 36.6
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 8.6e-11 70.9 123 35.0
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 8.6e-11 70.9 123 35.0
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 8.6e-11 70.9 120 35.0
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 8.6e-11 70.9 123 35.0
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 33.3
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 33.3
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 35.0
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 34.1
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 35.0
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 1.1e-10 70.5 123 35.0
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.5e-10 70.1 123 34.1
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 1.5e-10 70.1 123 35.0
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.9e-10 69.7 123 35.0
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.9e-10 69.7 129 35.7
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.5e-10 69.3 123 35.0
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.5e-10 69.3 123 35.0
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 2.5e-10 69.3 120 34.2
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 3.3e-10 68.9 123 32.5
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 3.3e-10 68.9 120 34.2
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.3e-10 68.9 120 34.2
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 34.1
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 34.1
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 35.0
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 34.1
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 34.1
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 34.1
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 4.3e-10 68.6 120 34.2
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 4.3e-10 68.6 123 32.5
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 4.3e-10 68.6 112 35.7
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 5.6e-10 68.2 108 37.0
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 5.6e-10 68.2 123 31.7
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 5.6e-10 68.2 123 33.3
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 5.6e-10 68.2 120 34.2
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 5.6e-10 68.2 123 33.3
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 7.3e-10 67.8 123 33.3
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 9.6e-10 67.4 123 33.3
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 9.6e-10 67.4 123 33.3
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.2e-09 67.0 123 33.3
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.2e-09 67.0 123 33.3
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.2e-09 67.0 123 32.5
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 2.1e-09 66.2 123 34.1
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 2.1e-09 66.2 108 35.2
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.1e-09 66.2 120 33.3
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.1e-09 66.2 120 33.3
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 2.1e-09 66.2 123 34.1
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 2.8e-09 65.9 123 34.1
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 2.8e-09 65.9 108 35.2
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 2.8e-09 65.9 108 36.1
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 2.8e-09 65.9 124 32.3
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 3.6e-09 65.5 123 33.3
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.6e-09 65.5 123 32.5
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 4.7e-09 65.1 123 31.7
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 4.7e-09 65.1 123 33.3
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 4.7e-09 65.1 123 33.3
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 4.7e-09 65.1 120 32.5
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 6.2e-09 64.7 123 33.3
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 6.2e-09 64.7 123 33.3
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 6.2e-09 64.7 123 34.1
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 6.2e-09 64.7 123 32.5
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 8.1e-09 64.3 108 35.2
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.1e-08 63.9 108 35.2
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.4e-08 62.8 120 32.5
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 3.1e-08 62.4 123 31.7
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 3.1e-08 62.4 120 31.7
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 4.0e-08 62.0 124 32.3
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 4.0e-08 62.0 123 32.5
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 4.0e-08 62.0 123 32.5
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 5.2e-08 61.6 123 31.7
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 5.2e-08 61.6 123 31.7
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 5.2e-08 61.6 123 31.7
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 5.2e-08 61.6 121 33.1
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 5.2e-08 61.6 118 29.7
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 5.2e-08 61.6 123 30.9
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 5.2e-08 61.6 111 30.6
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 6.8e-08 61.2 128 32.8
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 6.8e-08 61.2 127 34.6
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 6.8e-08 61.2 127 34.6
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 6.8e-08 61.2 123 33.3
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 8.9e-08 60.8 90 40.0
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 8.9e-08 60.8 115 33.0
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 1.2e-07 60.5 108 34.3
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.2e-07 60.5 124 31.5
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.5e-07 60.1 112 34.8
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 1.5e-07 60.1 105 35.2
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.0e-07 59.7 123 32.5
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.0e-07 59.7 126 28.6
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 2.6e-07 59.3 121 33.1
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 3.4e-07 58.9 136 30.9
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.4e-07 58.5 120 31.7
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 5.8e-07 58.2 116 33.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 5.8e-07 58.2 117 32.5
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 5.8e-07 58.2 105 35.2
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 5.8e-07 58.2 120 31.7
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 7.6e-07 57.8 101 35.6
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 9.9e-07 57.4 141 28.4
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 9.9e-07 57.4 108 34.3
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 9.9e-07 57.4 90 40.0
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.3e-06 57.0 90 37.8
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.7e-06 56.6 90 38.9
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 2.2e-06 56.2 123 35.8
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 2.2e-06 56.2 90 38.9
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 2.2e-06 56.2 116 31.9
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 2.9e-06 55.8 101 34.7
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 3.8e-06 55.5 90 37.8
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 3.8e-06 55.5 90 37.8
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 4.9e-06 55.1 90 37.8
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 4.9e-06 55.1 105 33.3
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 8.4e-06 54.3 98 31.6
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 8.4e-06 54.3 105 31.4


User provided reference genes

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