Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 0.0e+00 2400.9 1239 100.0
Cfa001641 Carpinus fangiana HOM05D005267 ORTHO05D123117 2.1e-18 99.4 460 23.0
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.8e-15 89.0 162 36.4
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 6.3e-15 87.8 185 34.6
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.8e-14 86.3 162 35.8
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.8e-14 86.3 162 35.8
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.8e-14 86.3 162 35.8
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 2.4e-14 85.9 181 31.5
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.4e-14 85.9 183 31.7
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.1e-14 85.5 163 32.5
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.1e-14 85.5 178 32.6
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 5.3e-14 84.7 176 33.5
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 7.0e-14 84.3 176 34.1
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 9.1e-14 84.0 178 30.3
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 9.1e-14 84.0 165 32.1
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.2e-13 83.6 177 35.6
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 2.7e-13 82.4 178 30.3
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.7e-13 82.4 167 34.7
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 3.5e-13 82.0 176 30.7
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.5e-13 82.0 178 30.3
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-13 82.0 176 33.5
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-13 82.0 176 33.5
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 4.5e-13 81.6 179 31.8
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 4.5e-13 81.6 141 33.3
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 5.9e-13 81.3 176 27.8
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 5.9e-13 81.3 168 30.4
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 7.7e-13 80.9 178 29.2
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 7.7e-13 80.9 175 30.3
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.0e-12 80.5 176 34.1
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.3e-12 80.1 177 29.9
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.3e-12 80.1 171 34.5
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.7e-12 79.7 175 29.7
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 1.7e-12 79.7 178 31.5
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 2.2e-12 79.3 156 32.1
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.2e-12 79.3 178 30.9
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.2e-12 79.3 174 31.0
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.9e-12 79.0 169 30.8
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 2.9e-12 79.0 175 29.1
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.9e-12 79.0 166 33.7
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 3.8e-12 78.6 162 30.2
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 5.0e-12 78.2 178 29.8
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 5.0e-12 78.2 181 30.4
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 5.0e-12 78.2 175 33.1
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 5.0e-12 78.2 175 33.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.0e-12 78.2 177 28.8
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 5.0e-12 78.2 181 31.5
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 6.5e-12 77.8 175 30.9
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.5e-12 77.8 176 30.1
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 6.5e-12 77.8 175 30.3
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 6.5e-12 77.8 175 33.1
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 6.5e-12 77.8 174 28.7
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 8.5e-12 77.4 171 30.4
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 8.5e-12 77.4 155 36.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 8.5e-12 77.4 174 31.0
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 8.5e-12 77.4 181 30.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.1e-11 77.0 168 32.1
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.1e-11 77.0 200 30.0
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.1e-11 77.0 176 29.5
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 1.1e-11 77.0 124 34.7
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.5e-11 76.6 168 31.5
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.9e-11 76.3 175 32.0
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.9e-11 76.3 175 30.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.5e-11 75.9 119 36.1
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.5e-11 75.9 167 31.1
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 2.5e-11 75.9 170 33.5
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 3.2e-11 75.5 171 31.6
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.2e-11 75.5 187 27.3
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 4.2e-11 75.1 175 30.9
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.2e-11 75.1 168 29.8
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 5.5e-11 74.7 172 30.2
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 7.2e-11 74.3 161 32.9
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 7.2e-11 74.3 174 30.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 7.2e-11 74.3 123 34.1
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 7.2e-11 74.3 168 29.8
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 7.2e-11 74.3 175 29.7
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 9.4e-11 73.9 168 31.0
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.2e-10 73.6 182 28.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.6e-10 73.2 175 30.9
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 1.6e-10 73.2 180 30.0
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 2.1e-10 72.8 175 32.0
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.7e-10 72.4 175 29.7
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.7e-10 72.4 175 29.7
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 2.7e-10 72.4 175 29.7
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.7e-10 72.4 161 29.8
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 3.6e-10 72.0 175 30.3
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 3.6e-10 72.0 175 30.3
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 4.7e-10 71.6 175 29.7
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 4.7e-10 71.6 169 29.6
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 6.1e-10 71.2 170 31.2
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 6.1e-10 71.2 176 27.3
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 1.0e-09 70.5 170 30.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 5.2e-09 68.2 170 32.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-08 67.0 160 31.9
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.5e-08 66.6 161 30.4
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.4e-08 65.1 161 31.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 4.4e-08 65.1 153 29.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.7e-08 64.7 161 31.7
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-07 63.2 160 31.2
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 3.7e-07 62.0 66 39.4
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 1.4e-06 60.1 63 42.9
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.1e-06 58.9 157 28.7
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.1e-06 58.9 63 41.3
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 4.1e-06 58.5 63 41.3
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 5.4e-06 58.2 64 43.8
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 7.0e-06 57.8 107 30.8


User provided reference genes

Program Settings