Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 5.7e-242 840.5 423 100.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.1e-55 220.7 313 41.9
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 7.6e-53 212.2 311 40.5
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.6e-53 212.2 317 41.3
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.3e-52 211.5 311 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 3.8e-52 209.9 335 39.7
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 3.8e-52 209.9 311 39.9
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 4.9e-52 209.5 313 39.9
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 6.4e-52 209.1 338 38.8
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 6.4e-52 209.1 338 38.8
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.1e-51 208.4 313 39.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.1e-51 208.4 313 40.6
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.4e-51 208.0 311 41.2
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.4e-51 208.0 311 40.2
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.4e-51 208.0 308 40.9
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.4e-51 208.0 311 40.2
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.9e-51 207.6 311 39.9
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 3.2e-51 206.8 330 37.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 3.2e-51 206.8 311 39.9
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.2e-51 206.8 314 40.4
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 4.2e-51 206.5 311 40.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.9
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.2
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 5.4e-51 206.1 311 39.5
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 7.1e-51 205.7 311 39.9
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 7.1e-51 205.7 311 39.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 7.1e-51 205.7 311 39.5
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 9.3e-51 205.3 311 39.2
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.3e-51 205.3 316 38.9
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.2e-50 204.9 303 40.3
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.2e-50 204.9 316 38.9
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.2e-50 204.9 326 38.3
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.2e-50 204.9 311 39.9
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.6e-50 204.5 311 39.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.6e-50 204.5 311 38.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 39.2
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 38.9
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.1e-50 204.1 318 38.7
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 39.5
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 39.2
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 39.5
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.1e-50 204.1 311 38.6
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 2.7e-50 203.8 318 38.7
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 2.7e-50 203.8 318 38.7
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 2.7e-50 203.8 318 38.7
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 38.9
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 38.9
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.7e-50 203.8 310 39.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.5e-50 203.4 311 38.9
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 3.5e-50 203.4 318 38.7
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 3.5e-50 203.4 311 38.9
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 3.5e-50 203.4 311 39.2
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 3.5e-50 203.4 311 39.2
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 3.5e-50 203.4 311 39.2
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 3.5e-50 203.4 303 39.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 4.6e-50 203.0 311 39.5
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.6e-50 203.0 311 39.5
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 4.6e-50 203.0 309 39.2
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 4.6e-50 203.0 309 39.2
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 6.0e-50 202.6 311 39.5
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 6.0e-50 202.6 311 38.9
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 6.0e-50 202.6 311 38.9
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 6.0e-50 202.6 320 39.7
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 7.8e-50 202.2 311 38.9
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-49 201.8 313 39.0
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.0e-49 201.8 311 38.9
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 1.0e-49 201.8 311 38.6
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.3e-49 200.7 311 38.9
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 2.3e-49 200.7 311 39.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.3e-49 200.7 311 38.3
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 3.0e-49 200.3 308 38.6
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.0e-49 200.3 303 39.3
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.0e-49 200.3 303 39.3
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 3.9e-49 199.9 303 39.6
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 5.1e-49 199.5 323 37.2
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 6.6e-49 199.1 324 38.3
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.6e-49 199.1 311 38.6
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 6.6e-49 199.1 307 38.1
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 8.7e-49 198.7 320 38.4
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 8.7e-49 198.7 307 38.4
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 8.7e-49 198.7 311 38.6
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.1e-48 198.4 333 37.2
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-48 198.4 307 38.1
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.5e-48 198.0 303 38.6
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.9e-48 197.6 311 38.9
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.9e-48 197.6 311 38.3
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 9.6e-48 195.3 318 38.4
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.3e-47 194.9 311 38.3
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.6e-47 194.5 315 39.4
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.8e-47 193.7 328 37.8
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.8e-47 193.7 308 38.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 8.1e-47 192.2 287 39.7
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.4e-46 191.4 363 35.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 3.1e-46 190.3 317 38.8
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 3.1e-46 190.3 332 37.0
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 4.0e-46 189.9 303 37.6
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 9.0e-46 188.7 317 37.9
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 9.0e-46 188.7 310 38.1
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 9.0e-46 188.7 316 37.0
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 2.6e-45 187.2 356 35.4
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.7e-44 184.5 311 37.3
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.2e-44 184.1 225 43.6
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.8e-44 183.3 330 35.8
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 9.3e-43 178.7 279 39.1
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.5e-42 176.8 344 33.4
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 5.6e-40 169.5 268 38.1
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.7e-39 166.8 292 38.0
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-39 166.4 311 34.4
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-39 166.4 311 34.4
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 4.8e-39 166.4 311 35.7
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.8e-38 164.5 315 36.2
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.0e-38 163.3 315 35.6
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 5.3e-38 162.9 318 35.5
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 3.4e-37 160.2 315 34.9
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.4e-37 160.2 315 35.2
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 4.5e-37 159.8 255 38.0
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 5.8e-37 159.5 315 34.6
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 5.8e-37 159.5 315 34.6
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 5.8e-37 159.5 315 34.6
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 5.8e-37 159.5 315 34.6
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-36 158.3 315 34.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.7e-36 157.9 315 35.2
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.2e-36 157.5 312 35.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.6e-34 149.8 253 36.8
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-32 145.2 311 33.8
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 7.4e-32 142.5 232 37.1
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.7e-31 140.2 215 38.1
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 8.2e-31 139.0 216 39.4
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 2.9e-28 130.6 215 36.7
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 6.5e-28 129.4 158 43.7
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 6.1e-26 122.9 340 28.8
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 7.4e-24 115.9 211 36.5
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.1e-18 97.8 235 32.8
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 6.3e-15 86.3 158 34.8
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 5.3e-14 83.2 177 33.9
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.2e-12 77.8 99 41.4
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 1.4e-09 68.6 121 34.7
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.0e-08 64.7 159 30.8
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 7.0e-06 56.2 121 30.6


User provided reference genes

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