Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022044 Carpinus fangiana HOM05D004597 ORTHO05D005629 3.0e-114 415.2 217 100.0
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 6.1e-14 82.0 102 38.2
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 3.0e-13 79.7 93 39.8
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 1.5e-12 77.4 72 47.2
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 4.4e-12 75.9 72 48.6
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 1.3e-11 74.3 98 36.7
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 1.3e-11 74.3 98 36.7
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 1.3e-11 74.3 98 36.7
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.7e-11 73.9 98 37.8
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.7e-11 73.9 98 37.8
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.7e-11 73.9 72 44.4
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 2.2e-11 73.6 156 32.7
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 2.2e-11 73.6 98 37.8
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 2.2e-11 73.6 72 44.4
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 2.8e-11 73.2 125 33.6
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 3.7e-11 72.8 138 33.3
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 4.8e-11 72.4 98 36.7
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 4.8e-11 72.4 72 43.1
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 4.8e-11 72.4 72 43.1
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 4.8e-11 72.4 98 36.7
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 4.8e-11 72.4 98 36.7
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 4.8e-11 72.4 98 36.7
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 6.3e-11 72.0 98 36.7
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 6.3e-11 72.0 72 43.1
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 6.3e-11 72.0 72 44.4
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 1.4e-10 70.9 98 36.7
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.4e-10 70.9 101 37.6
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.4e-10 70.9 120 34.2
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.8e-10 70.5 129 32.6
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 2.4e-10 70.1 120 33.3
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 3.1e-10 69.7 98 36.7
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 3.1e-10 69.7 149 31.5
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 3.1e-10 69.7 98 35.7
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 3.1e-10 69.7 98 36.7
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 3.1e-10 69.7 101 36.6
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 4.1e-10 69.3 120 33.3
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 4.1e-10 69.3 98 35.7
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 4.1e-10 69.3 72 41.7
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 4.1e-10 69.3 145 31.0
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 5.3e-10 68.9 98 34.7
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 5.3e-10 68.9 72 41.7
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 5.3e-10 68.9 98 35.7
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 5.3e-10 68.9 72 41.7
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 5.3e-10 68.9 98 35.7
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 5.3e-10 68.9 72 41.7
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 35.7
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 35.7
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 35.7
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 35.7
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 36.7
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 6.9e-10 68.6 72 43.1
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 6.9e-10 68.6 120 35.0
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 6.9e-10 68.6 72 40.3
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 6.9e-10 68.6 72 40.3
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 6.9e-10 68.6 98 34.7
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 6.9e-10 68.6 149 30.2
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 9.1e-10 68.2 94 36.2
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 9.1e-10 68.2 109 34.9
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 34.7
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 34.7
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 9.1e-10 68.2 98 35.7
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 9.1e-10 68.2 72 40.3
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 1.2e-09 67.8 94 37.2
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 1.2e-09 67.8 72 40.3
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 1.2e-09 67.8 98 35.7
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 41.7
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 41.7
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 41.7
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 41.7
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 40.3
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 40.3
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 1.5e-09 67.4 72 40.3
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 2.0e-09 67.0 72 40.3
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 2.0e-09 67.0 72 40.3
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 2.0e-09 67.0 94 34.0
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.0e-09 67.0 98 35.7
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 2.6e-09 66.6 72 40.3
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 2.6e-09 66.6 72 40.3
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 2.6e-09 66.6 72 40.3
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 2.6e-09 66.6 72 40.3
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 2.6e-09 66.6 101 36.6
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 3.4e-09 66.2 72 44.4
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 3.4e-09 66.2 117 32.5
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 3.4e-09 66.2 117 32.5
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 3.4e-09 66.2 72 38.9
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 4.5e-09 65.9 71 40.8
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 4.5e-09 65.9 98 33.7
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 4.5e-09 65.9 71 40.8
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 4.5e-09 65.9 69 42.0
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 4.5e-09 65.9 72 40.3
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 4.5e-09 65.9 97 35.1
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 4.5e-09 65.9 71 40.8
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 4.5e-09 65.9 119 29.4
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 4.5e-09 65.9 98 34.7
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 5.9e-09 65.5 103 32.0
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 5.9e-09 65.5 98 33.7
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 5.9e-09 65.5 72 40.3
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 5.9e-09 65.5 72 40.3
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 5.9e-09 65.5 117 31.6
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 5.9e-09 65.5 72 40.3
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 7.7e-09 65.1 188 28.7
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 1.0e-08 64.7 72 37.5
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 1.3e-08 64.3 71 39.4
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 1.3e-08 64.3 128 32.0
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 1.7e-08 63.9 171 30.4
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 2.2e-08 63.5 130 32.3
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 2.2e-08 63.5 72 37.5
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 2.2e-08 63.5 98 32.7
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 3.8e-08 62.8 192 28.6
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 3.8e-08 62.8 101 32.7
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 5.0e-08 62.4 72 37.5
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 1.4e-07 60.8 143 29.4
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 7.2e-07 58.5 63 41.3
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 7.2e-07 58.5 63 38.1
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 7.2e-07 58.5 72 36.1
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 9.4e-07 58.2 156 30.8
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 9.4e-07 58.2 190 27.4
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 1.6e-06 57.4 156 29.5
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 6.1e-06 55.5 160 26.2
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 7.9e-06 55.1 163 30.7


User provided reference genes

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