Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.1e-135 484.2 249 100.0
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.3e-23 112.1 242 32.6
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.1e-22 109.4 194 38.1
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 2.9e-20 103.2 209 35.9
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.8e-20 102.8 237 33.8
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 3.8e-20 102.8 196 37.8
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 8.5e-20 101.7 209 35.4
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 8.5e-20 101.7 241 34.4
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.1e-19 101.3 238 33.2
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.1e-19 101.3 196 35.7
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.1e-19 101.3 210 35.2
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-19 100.9 209 35.9
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.4e-19 100.9 238 34.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.9e-19 100.5 228 33.3
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.9e-19 100.5 200 36.5
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.5e-19 100.1 241 32.8
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.5e-19 100.1 209 35.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.5e-19 100.1 209 34.9
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.2e-19 99.8 212 34.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.2e-19 99.8 233 34.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 3.2e-19 99.8 196 36.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 4.2e-19 99.4 196 35.2
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 5.5e-19 99.0 200 34.5
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.5e-19 99.0 200 35.5
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.2e-19 98.6 200 36.0
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.2e-19 98.6 209 35.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 9.4e-19 98.2 241 32.4
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-18 97.8 254 32.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.2e-18 97.8 214 36.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.2e-18 97.8 237 33.8
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.2e-18 97.8 209 34.4
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.2e-18 97.8 197 34.5
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-18 97.4 196 35.2
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.6e-18 97.4 237 31.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.1e-18 97.1 251 32.7
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.1e-18 97.1 200 34.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.1e-18 97.1 241 34.9
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.1e-18 97.1 241 34.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-18 97.1 241 34.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.1e-18 97.1 241 32.8
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 2.1e-18 97.1 237 32.1
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.7e-18 96.7 196 35.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.7e-18 96.7 236 34.3
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.7e-18 96.7 209 34.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.7e-18 96.7 242 32.2
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 3.6e-18 96.3 203 35.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 3.6e-18 96.3 204 35.3
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 4.7e-18 95.9 254 32.3
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 4.7e-18 95.9 254 32.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 4.7e-18 95.9 200 34.0
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.7e-18 95.9 228 31.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.7e-18 95.9 200 35.0
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 4.7e-18 95.9 239 33.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 4.7e-18 95.9 209 33.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.7e-18 95.9 228 34.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 6.1e-18 95.5 209 34.4
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 6.1e-18 95.5 209 34.4
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 8.0e-18 95.1 238 33.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 8.0e-18 95.1 220 35.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.0e-18 95.1 196 36.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.0e-17 94.7 239 33.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.0e-17 94.7 250 33.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.0e-17 94.7 238 32.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.4e-17 94.4 239 33.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.8e-17 94.0 209 34.4
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.8e-17 94.0 196 35.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.8e-17 94.0 196 36.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.8e-17 94.0 229 34.1
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-17 94.0 239 32.6
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-17 94.0 239 32.6
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.8e-17 94.0 239 33.1
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.3e-17 93.6 210 35.2
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.3e-17 93.6 250 30.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.3e-17 93.6 237 32.9
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 3.0e-17 93.2 250 32.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.0e-17 93.2 214 35.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.0e-17 93.2 214 35.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.0e-17 93.2 243 32.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 3.0e-17 93.2 209 33.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 3.9e-17 92.8 239 31.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 5.2e-17 92.4 209 34.9
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.7e-17 92.0 239 33.1
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 8.8e-17 91.7 238 33.2
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 8.8e-17 91.7 240 32.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 8.8e-17 91.7 196 35.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 8.8e-17 91.7 226 33.2
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.8e-17 91.7 239 33.1
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.1e-16 91.3 240 32.9
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.1e-16 91.3 240 32.9
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.1e-16 91.3 200 34.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.5e-16 90.9 239 32.6
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.0e-16 90.5 200 34.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-16 90.1 248 32.3
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.3e-16 89.7 248 31.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-16 89.7 242 32.2
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-16 89.7 248 32.3
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-16 89.7 239 32.2
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.4e-16 89.4 250 32.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 4.4e-16 89.4 262 30.5
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.7e-16 89.0 194 35.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.7e-16 89.0 233 32.6
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 7.4e-16 88.6 227 33.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 9.7e-16 88.2 196 34.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-15 87.8 201 34.3
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.7e-15 87.4 244 32.4
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-15 87.4 227 33.0
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.7e-15 87.4 242 31.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.7e-15 86.3 187 34.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 3.7e-15 86.3 225 32.4
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 8.2e-15 85.1 240 32.9
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.4e-14 83.6 188 33.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.4e-14 83.6 190 33.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.1e-14 83.2 178 34.8
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 4.1e-14 82.8 235 31.5
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.1e-14 82.8 264 29.2
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.3e-14 82.4 222 31.1
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.3e-14 82.4 237 31.2
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 7.0e-14 82.0 235 31.5
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.0e-14 82.0 242 29.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 5.9e-13 79.0 236 31.4
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.9e-13 79.0 237 31.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.9e-13 79.0 242 31.8
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.0e-12 78.2 209 32.1
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.0e-12 78.2 240 30.8
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.5e-11 74.3 241 32.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.9e-11 73.9 184 32.1
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.2e-11 73.2 184 32.6
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.2e-11 73.2 241 29.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.6e-10 69.7 228 30.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.7e-10 69.3 221 30.8
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.0e-10 68.6 168 32.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.3e-09 67.0 133 34.6
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.0e-09 66.2 137 30.7
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 5.2e-09 65.9 245 28.6
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.7e-09 65.5 273 26.4
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-08 64.7 169 32.5
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.5e-08 64.3 121 36.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 9.7e-08 61.6 156 32.1
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.3e-07 61.2 139 32.4
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.3e-07 61.2 154 32.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.7e-07 60.8 121 38.0
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 3.7e-07 59.7 121 34.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.4e-06 57.0 121 35.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.1e-06 56.2 222 26.6


User provided reference genes

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