Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.8e-293 1010.7 512 100.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.8e-56 224.6 500 33.8
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 6.8e-56 222.6 460 33.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.2e-55 221.9 469 33.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 5.7e-55 219.5 463 33.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 7.5e-55 219.2 500 32.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 7.5e-55 219.2 499 33.1
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.5e-55 219.2 499 33.1
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.5e-55 219.2 500 32.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.5e-55 219.2 498 33.7
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.8e-55 218.8 455 33.2
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 9.8e-55 218.8 475 32.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.2e-54 217.6 470 33.2
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.2e-54 217.6 466 34.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.9e-54 217.2 497 32.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 3.7e-54 216.9 450 32.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.7e-54 216.9 499 32.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.7e-54 216.9 501 33.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.7e-54 216.9 466 32.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 4.9e-54 216.5 464 33.0
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.4e-54 216.1 477 33.1
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.4e-54 216.1 454 33.9
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 6.4e-54 216.1 494 32.4
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 8.3e-54 215.7 493 31.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.1e-53 215.3 506 32.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.1e-53 215.3 512 31.4
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.4e-53 214.9 481 33.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.8e-53 214.5 497 33.0
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.0e-53 212.6 475 33.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 7.0e-53 212.6 516 32.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 9.2e-53 212.2 501 32.3
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 9.2e-53 212.2 476 32.4
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.2e-52 211.8 480 31.9
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.2e-52 211.8 454 33.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.2e-52 211.8 500 32.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.2e-52 211.8 460 32.8
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.6e-52 211.5 479 32.4
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.6e-52 211.5 498 31.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.7e-52 210.7 477 31.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.7e-52 210.7 500 32.2
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.7e-52 210.7 481 32.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.7e-52 210.7 489 31.9
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.5e-52 210.3 480 31.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.6e-52 209.9 462 32.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 5.9e-52 209.5 495 32.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 5.9e-52 209.5 482 32.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.8e-52 209.1 496 33.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.0e-51 208.8 482 32.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.0e-51 208.8 456 32.0
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.3e-51 208.4 476 33.0
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.3e-51 208.4 500 32.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.7e-51 208.0 454 32.8
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.7e-51 208.0 480 32.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.3e-51 207.6 467 32.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.9e-51 206.8 496 32.7
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.9e-51 206.8 467 31.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.9e-51 206.8 475 31.8
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.6e-51 205.7 471 32.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.1e-50 205.3 475 32.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.9e-50 204.5 489 31.9
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.9e-50 204.5 489 32.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.9e-50 204.5 486 33.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 2.5e-50 204.1 466 31.8
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.5e-50 204.1 482 32.8
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.3e-50 203.4 443 32.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.3e-50 203.4 471 31.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 7.3e-50 202.6 459 30.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.3e-50 202.6 467 31.7
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 7.3e-50 202.6 508 31.7
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 7.3e-50 202.6 481 32.2
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 9.5e-50 202.2 482 31.7
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.2e-49 201.8 466 31.5
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-49 201.8 470 31.7
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.6e-49 201.4 478 32.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.8e-49 200.7 494 31.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.8e-49 200.7 497 31.0
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.6e-49 200.3 511 33.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 3.6e-49 200.3 453 31.8
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.7e-49 199.9 481 30.8
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 8.0e-49 199.1 482 31.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.1e-48 198.7 507 30.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.1e-48 198.7 477 32.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.4e-48 198.4 477 31.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.8e-48 198.0 484 31.4
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.8e-48 198.0 477 31.2
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 5.2e-48 196.4 477 32.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.8e-48 196.1 462 31.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.0e-47 194.5 501 30.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.4e-47 193.7 466 33.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 3.4e-47 193.7 450 31.1
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.8e-47 193.0 485 31.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.2e-46 191.0 458 32.5
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 4.9e-46 189.9 455 30.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 6.4e-46 189.5 293 42.0
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 6.4e-46 189.5 434 32.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.1e-45 188.7 484 30.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.4e-45 188.3 460 32.0
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.9e-45 188.0 482 31.5
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.1e-45 186.8 492 30.7
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.1e-45 186.8 492 30.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.0e-45 186.0 509 30.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.7e-44 184.1 504 30.0
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 4.6e-44 183.3 481 30.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.6e-44 183.3 453 31.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 7.8e-44 182.6 557 28.7
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.9e-43 180.3 537 29.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.9e-42 177.9 512 32.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.3e-42 177.2 469 30.9
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.1e-40 172.2 325 33.5
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.6e-39 167.5 256 38.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 9.9e-39 165.6 322 33.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.7e-38 163.7 458 31.0
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.9e-37 161.4 325 32.9
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.7e-36 157.5 425 29.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-35 155.6 317 34.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-35 154.8 288 36.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-28 132.1 268 32.8
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-26 124.4 282 33.3
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.6e-25 121.7 384 28.4
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 8.1e-25 119.4 370 29.5
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-22 112.1 347 28.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.1e-21 109.0 210 34.8
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-18 99.0 401 26.7
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-17 94.7 250 31.6
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.4e-16 92.0 198 33.3
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-15 89.0 110 42.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.6e-15 87.8 518 22.6
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.8e-14 84.0 312 27.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-11 75.1 96 42.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 8.7e-11 72.8 347 27.1
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.8e-08 65.1 111 31.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 9.0e-08 62.8 110 34.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 5.8e-07 60.1 225 27.1


User provided reference genes

Program Settings