Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.2e-229 798.1 413 100.0
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 7.3e-85 318.5 352 45.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 6.2e-84 315.5 353 45.0
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 6.2e-84 315.5 354 44.9
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.1e-83 314.7 348 43.7
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.8e-83 313.9 348 44.0
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.4e-83 313.5 344 45.1
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 3.1e-83 313.2 345 45.2
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 6.9e-83 312.0 354 44.4
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 9.0e-83 311.6 344 44.8
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 9.0e-83 311.6 352 45.2
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 9.0e-83 311.6 351 43.9
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 9.0e-83 311.6 351 43.9
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.2e-82 311.2 357 44.3
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.2e-82 311.2 351 44.2
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.5e-82 310.8 347 44.1
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.5e-82 310.8 352 44.3
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.5e-82 310.8 352 44.0
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.5e-82 310.8 351 43.9
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 2.0e-82 310.5 350 44.6
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-82 310.5 351 44.4
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-82 310.5 351 44.2
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.0e-82 310.5 351 43.3
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 2.0e-82 310.5 352 43.8
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 3.4e-82 309.7 344 44.8
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 3.4e-82 309.7 351 43.6
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.5e-82 309.3 345 46.1
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 4.5e-82 309.3 352 43.5
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.5e-82 309.3 352 44.0
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 5.8e-82 308.9 344 45.1
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 5.8e-82 308.9 354 43.5
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.8e-82 308.9 351 44.2
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 7.6e-82 308.5 344 44.8
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 9.9e-82 308.1 351 44.4
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.9e-82 308.1 344 45.1
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 9.9e-82 308.1 352 43.8
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.9e-82 308.1 351 43.9
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-81 307.8 344 45.1
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.7e-81 307.4 356 43.8
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.7e-81 307.4 354 44.6
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.7e-81 307.4 343 44.0
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.7e-81 307.4 351 43.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.7e-81 307.4 351 43.9
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 2.2e-81 307.0 345 44.9
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.2e-81 307.0 344 44.2
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 2.9e-81 306.6 352 44.3
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.8e-81 306.2 344 44.8
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.8e-81 306.2 344 44.8
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.8e-81 306.2 351 43.3
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 4.9e-81 305.8 355 43.4
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 4.9e-81 305.8 350 44.3
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 4.9e-81 305.8 352 44.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 6.4e-81 305.4 344 44.8
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.4e-81 305.4 352 44.0
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 8.4e-81 305.1 351 44.2
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 8.4e-81 305.1 351 44.2
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 8.4e-81 305.1 344 43.9
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 8.4e-81 305.1 344 44.2
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.9e-80 303.9 345 45.2
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.4e-80 303.5 352 43.8
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 2.4e-80 303.5 351 43.9
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.2e-80 303.1 344 45.1
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 3.2e-80 303.1 344 44.8
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.2e-80 303.1 344 43.9
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 3.2e-80 303.1 351 43.6
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.2e-80 302.8 352 43.8
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 4.2e-80 302.8 345 44.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 5.4e-80 302.4 351 44.2
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 5.4e-80 302.4 344 43.9
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 7.1e-80 302.0 347 44.1
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.1e-80 302.0 344 43.3
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.1e-80 302.0 352 43.5
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 9.3e-80 301.6 345 45.5
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 9.3e-80 301.6 344 43.3
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 9.3e-80 301.6 343 45.2
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.2e-79 301.2 344 44.8
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.2e-79 301.2 344 43.0
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.2e-79 301.2 364 42.3
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.2e-79 301.2 345 44.3
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.2e-79 301.2 350 43.7
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.2e-79 301.2 351 44.2
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.2e-79 301.2 354 43.5
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.6e-79 300.8 352 43.5
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.6e-79 300.8 344 44.2
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.1e-79 300.4 344 43.6
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 2.1e-79 300.4 344 43.0
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.1e-79 300.4 344 45.1
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.7e-79 300.1 351 43.3
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.7e-79 300.1 351 43.3
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 3.5e-79 299.7 344 43.6
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 4.6e-79 299.3 344 43.3
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 4.6e-79 299.3 344 43.3
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.0e-79 298.9 343 43.7
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 6.0e-79 298.9 343 44.3
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 6.0e-79 298.9 343 44.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.0e-79 298.9 357 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.0e-78 298.1 345 45.2
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.0e-78 298.1 344 43.6
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.3e-78 297.7 346 43.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 3.9e-78 296.2 344 42.7
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.1e-78 295.8 344 43.0
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 5.1e-78 295.8 351 43.3
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.6e-78 295.4 345 43.2
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 8.7e-78 295.0 343 43.1
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.1e-77 294.7 350 42.3
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.6e-76 290.8 347 45.8
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 6.2e-76 288.9 410 39.0
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 6.2e-76 288.9 356 41.3
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 6.2e-76 288.9 366 41.3
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 8.1e-76 288.5 329 44.4
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.4e-75 287.0 353 41.6
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.7e-73 280.8 336 43.2
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.2e-73 280.4 347 42.9
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.2e-73 280.4 347 42.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 4.9e-73 279.3 344 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.4e-72 277.7 345 42.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.2e-71 274.6 359 40.9
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.0e-70 271.6 344 44.5
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.1e-69 268.1 342 42.4
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.3e-68 264.6 317 43.5
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 3.7e-68 263.1 311 43.1
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 1.2e-66 258.1 303 44.6
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.5e-61 240.4 362 37.8
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 9.6e-61 238.4 285 43.9
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 1.6e-60 237.7 373 36.5
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.7e-53 212.6 221 47.1
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.0e-46 190.3 235 41.7
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.5e-45 188.0 210 44.3
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.7e-26 124.0 160 42.5
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.4e-11 74.3 91 44.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.9e-10 69.7 74 47.3
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.6e-07 60.5 81 38.3


User provided reference genes

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