Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021930 Carpinus fangiana HOM05D002025 ORTHO05D001991 7.7e-36 153.3 78 100.0
Cfa010216 Carpinus fangiana HOM05D002025 ORTHO05D001991 1.6e-20 102.4 63 87.3
Haze_23603 Corylus avellana HOM05D002025 ORTHO05D001991 2.5e-18 95.1 63 85.7
Cfa013645 Carpinus fangiana HOM05D002025 ORTHO05D001991 7.2e-18 93.6 63 76.2
ClCG02G024100 Citrullus lanatus HOM05D002025 ORTHO05D001991 3.2e-13 78.2 77 54.5
MELO3C014692.2 Cucumis melo HOM05D002025 ORTHO05D001991 3.2e-13 78.2 77 55.8
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 7.0e-13 77.0 73 57.5
CiPaw.13G126200 Carya illinoinensis HOM05D002025 ORTHO05D001991 3.5e-12 74.7 68 64.7
CANSAT54G0233 Cannabis sativa HOM05D002025 ORTHO05D001991 8.6e-11 70.1 70 52.9
COL.COLO4_25368 Corchorus olitorius HOM05D002025 ORTHO05D001991 1.9e-10 68.9 67 61.2
TAR369G1029 Trochodendron aralioides HOM05D002025 ORTHO05D001991 2.5e-10 68.6 66 59.1
PGR142G1790 Punica granatum HOM05D002025 ORTHO05D001991 5.6e-10 67.4 79 49.4
Prupe.7G090300 Prunus persica HOM05D002025 ORTHO05D001991 1.2e-09 66.2 70 48.6
Thecc.09G268500 Theobroma cacao HOM05D002025 ORTHO05D001991 1.2e-09 66.2 67 50.7
Carub.0004s0772 Capsella rubella HOM05D002025 ORTHO05D001991 2.1e-09 65.5 72 50.0
Migut.J00733 Erythranthe guttata HOM05D002025 ORTHO05D001991 2.8e-09 65.1 71 47.9
FAN14G3941 Fragaria x ananassa HOM05D002025 ORTHO05D001991 3.6e-09 64.7 70 50.0
Phvul.001G198100 Phaseolus vulgaris HOM05D002025 ORTHO05D001991 3.6e-09 64.7 71 50.7
FAN02G0183 Fragaria x ananassa HOM05D002025 ORTHO05D001991 4.7e-09 64.3 70 50.0
FAN09G2632 Fragaria x ananassa HOM05D002025 ORTHO05D001991 4.7e-09 64.3 70 50.0
FAN05G4348 Fragaria x ananassa HOM05D002025 ORTHO05D001991 6.2e-09 63.9 70 50.0
FAN05G4575 Fragaria x ananassa HOM05D002025 ORTHO05D001991 6.2e-09 63.9 70 50.0
AL172U10020 Arabidopsis lyrata HOM05D002025 ORTHO05D001991 8.0e-09 63.5 49 59.2
AL4G20930 Arabidopsis lyrata HOM05D002025 ORTHO05D001991 8.0e-09 63.5 49 59.2
BcaC02g10859 Brassica carinata HOM05D002025 ORTHO05D001991 1.0e-08 63.2 63 50.8
FvH4_6g20920 Fragaria vesca HOM05D002025 ORTHO05D001991 1.4e-08 62.8 70 48.6
Glyma.19G201900 Glycine max HOM05D002025 ORTHO05D001991 1.4e-08 62.8 74 48.6
TAR623G1549 Trochodendron aralioides HOM05D002025 ORTHO05D001991 1.4e-08 62.8 66 54.5
A07p18020 Brassica napus HOM05D002025 ORTHO05D001991 1.8e-08 62.4 63 50.8
BraA07t29520Z Brassica rapa HOM05D002025 ORTHO05D001991 1.8e-08 62.4 63 50.8
C04p24370 Brassica napus HOM05D002025 ORTHO05D001991 2.3e-08 62.0 64 51.6
BolC4t23935H Brassica oleracea HOM05D002025 ORTHO05D001991 2.3e-08 62.0 64 51.6
CsaV3_1G004500 Cucumis sativus L. HOM05D002025 ORTHO05D001991 2.3e-08 62.0 76 44.7
Duzib170G0914 Durio zibethinus HOM05D002025 ORTHO05D001991 2.3e-08 62.0 69 47.8
Lalb_Chr25g0287861 Lupinus albus HOM05D002025 ORTHO05D001991 2.3e-08 62.0 70 44.3
Cfa020076 Carpinus fangiana HOM05D002025 ORTHO05D001991 3.1e-08 61.6 60 53.3
RcHm_v2.0_Chr3g0477261 Rosa chinensis HOM05D002025 ORTHO05D001991 3.1e-08 61.6 64 53.1
Sopen06g030250 Solanum pennellii HOM05D002025 ORTHO05D001991 3.1e-08 61.6 49 57.1
ClCG10G018030 Citrullus lanatus HOM05D002025 ORTHO05D001991 4.0e-08 61.2 70 48.6
Ciclev10029482m.g Citrus clementina HOM05D002025 ORTHO05D001991 5.2e-08 60.8 66 53.0
Cc06_g06920 Coffea canephora HOM05D002025 ORTHO05D001991 5.2e-08 60.8 69 46.4
Duzib150G1621 Durio zibethinus HOM05D002025 ORTHO05D001991 5.2e-08 60.8 77 44.2
Sed0011955 Sechium edule HOM05D002025 ORTHO05D001991 5.2e-08 60.8 77 44.2
Aa31LG5G8620 Aethionema arabicum HOM05D002025 ORTHO05D001991 8.9e-08 60.1 81 42.0
ClCG06G014180 Citrullus lanatus HOM05D002025 ORTHO05D001991 8.9e-08 60.1 76 44.7
Oeu045022.1 Olea europaea HOM05D002025 ORTHO05D001991 8.9e-08 60.1 71 49.3
Rhsim01G0198700 Rhododendron simsii HOM05D002025 ORTHO05D001991 8.9e-08 60.1 72 54.2
Solyc06g073850.1 Solanum lycopersicum HOM05D002025 ORTHO05D001991 8.9e-08 60.1 48 56.2
VMungo1383G1576 Vigna mungo HOM05D002025 ORTHO05D001991 8.9e-08 60.1 71 49.3
A03p26710 Brassica napus HOM05D002025 ORTHO05D001991 1.5e-07 59.3 65 50.8
BraA03t11883Z Brassica rapa HOM05D002025 ORTHO05D001991 1.5e-07 59.3 65 50.8
Haze_20117 Corylus avellana HOM05D002025 ORTHO05D001991 1.5e-07 59.3 51 60.8
Eucgr.A02549 Eucalyptus grandis HOM05D002025 ORTHO05D001991 1.5e-07 59.3 73 46.6
Psat3g027400 Pisum sativum HOM05D002025 ORTHO05D001991 1.5e-07 59.3 72 45.8
BcaC01g04926 Brassica carinata HOM05D002025 ORTHO05D001991 2.0e-07 58.9 65 50.8
C03p32020 Brassica napus HOM05D002025 ORTHO05D001991 2.0e-07 58.9 65 50.8
BolC3t15546H Brassica oleracea HOM05D002025 ORTHO05D001991 2.0e-07 58.9 65 50.8
Glyma.03G204500 Glycine max HOM05D002025 ORTHO05D001991 2.0e-07 58.9 73 47.9
Oeu058126.1 Olea europaea HOM05D002025 ORTHO05D001991 2.0e-07 58.9 68 48.5
MELO3C017376.2 Cucumis melo HOM05D002025 ORTHO05D001991 2.6e-07 58.5 76 42.1
BcaB01g03054 Brassica carinata HOM05D002025 ORTHO05D001991 3.4e-07 58.2 65 47.7
Migut.L01846 Erythranthe guttata HOM05D002025 ORTHO05D001991 3.4e-07 58.2 71 46.5
Sed0017347 Sechium edule HOM05D002025 ORTHO05D001991 3.4e-07 58.2 47 55.3
HPP92_026333 Vanilla planifolia HOM05D002025 ORTHO05D001991 4.4e-07 57.8 59 49.2
Lalb_Chr20g0111231 Lupinus albus HOM05D002025 ORTHO05D001991 5.8e-07 57.4 64 46.9
Medtr7g106820 Medicago truncatula HOM05D002025 ORTHO05D001991 5.8e-07 57.4 66 48.5
Peaxi162Scf00098g00155 Petunia axillaris HOM05D002025 ORTHO05D001991 5.8e-07 57.4 38 71.1
PGR119G2356 Punica granatum HOM05D002025 ORTHO05D001991 5.8e-07 57.4 87 41.4
ATR0618G098 Amborella trichopoda HOM05D002025 ORTHO05D001991 7.5e-07 57.0 63 42.9
Lalb_Chr01g0017741 Lupinus albus HOM05D002025 ORTHO05D001991 7.5e-07 57.0 72 44.4
Ca_09078_v3 Cicer arietinum L. HOM05D002025 ORTHO05D001991 9.8e-07 56.6 72 44.4
PGSC0003DMG400021375 Solanum tuberosum HOM05D002025 ORTHO05D001991 9.8e-07 56.6 73 43.8
MD12G1045100 Malus domestica HOM05D002025 ORTHO05D001991 1.3e-06 56.2 70 44.3
Manes.11G104560 Manihot esculenta HOM05D002025 ORTHO05D001991 1.3e-06 56.2 59 45.8
Sc07g0006380 Simmondsia chinensis HOM05D002025 ORTHO05D001991 1.3e-06 56.2 72 45.8
TPR.G4206 Trifolium pratense HOM05D002025 ORTHO05D001991 1.3e-06 56.2 50 58.0
MSTRG.5912 Avicennia marina HOM05D002025 ORTHO05D001991 1.7e-06 55.8 36 69.4
Oeu035663.1 Olea europaea HOM05D002025 ORTHO05D001991 1.7e-06 55.8 71 49.3
Sabra16G0067700 Salix brachista HOM05D002025 ORTHO05D001991 1.7e-06 55.8 47 53.2
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 2.2e-06 55.5 66 43.9
Glyma.13G310800 Glycine max HOM05D002025 ORTHO05D001991 2.2e-06 55.5 63 46.0
Nn4g24817 Nelumbo nucifera HOM05D002025 ORTHO05D001991 2.2e-06 55.5 70 47.1
Peaxi162Scf00203g00052 Petunia axillaris HOM05D002025 ORTHO05D001991 2.2e-06 55.5 78 41.0
QL01p018970 Quercus lobata HOM05D002025 ORTHO05D001991 2.2e-06 55.5 51 58.8
PGSC0003DMG400002991 Solanum tuberosum HOM05D002025 ORTHO05D001991 2.2e-06 55.5 37 67.6
arahy.Tifrunner.gnm1.ann1.C1Z4ZG Arachis hypogaea HOM05D002025 ORTHO05D001991 2.9e-06 55.1 44 61.4
arahy.Tifrunner.gnm1.ann1.P25GE7 Arachis hypogaea HOM05D002025 ORTHO05D001991 2.9e-06 55.1 44 61.4
Peaxi162Scf00345g00619 Petunia axillaris HOM05D002025 ORTHO05D001991 2.9e-06 55.1 62 53.2
PGSC0003DMG400005908 Solanum tuberosum HOM05D002025 ORTHO05D001991 2.9e-06 55.1 51 58.8
Actinidia03858 Actinidia chinensis HOM05D002025 ORTHO05D001991 3.7e-06 54.7 79 45.6
Actinidia03966 Actinidia chinensis HOM05D002025 ORTHO05D001991 3.7e-06 54.7 79 45.6
CiPaw.09G023600 Carya illinoinensis HOM05D002025 ORTHO05D001991 3.7e-06 54.7 75 44.0
Potri.004G190500 Populus trichocarpa HOM05D002025 ORTHO05D001991 3.7e-06 54.7 90 43.3
QL07p026590 Quercus lobata HOM05D002025 ORTHO05D001991 3.7e-06 54.7 43 60.5
CSS0022343 Camellia sinensis var. sinensis HOM05D002025 ORTHO05D001991 4.9e-06 54.3 58 56.9
Potri.006G200100 Populus trichocarpa HOM05D002025 ORTHO05D001991 4.9e-06 54.3 47 53.2
Dinv18867 Davidia involucrata HOM05D002025 ORTHO05D001991 6.4e-06 53.9 54 57.4
Nitab4.5_0002426g0050 Nicotiana tabacum HOM05D002025 ORTHO05D001991 6.4e-06 53.9 46 52.2
Nitab4.5_0006895g0010 Nicotiana tabacum HOM05D002025 ORTHO05D001991 6.4e-06 53.9 46 52.2
Lalb_Chr01g0005791 Lupinus albus HOM05D002025 ORTHO05D001991 8.3e-06 53.5 40 62.5
Nitab4.5_0003557g0010 Nicotiana tabacum HOM05D002025 ORTHO05D001991 8.3e-06 53.5 74 43.2
HPP92_018633 Vanilla planifolia HOM05D002025 ORTHO05D001991 8.3e-06 53.5 50 52.0


User provided reference genes

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