Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1687.2 872 100.0
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1566.6 1052 80.3
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1441.4 870 83.3
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1404.8 867 82.1
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1275.8 866 74.6
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1267.7 866 74.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1260.0 869 73.8
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1251.5 868 73.6
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1251.1 868 73.5
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1245.7 868 73.5
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1243.4 868 73.3
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1243.0 868 73.5
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1240.3 866 72.6
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1239.9 866 72.5
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1229.5 866 72.6
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1224.2 868 72.9
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1223.8 866 72.1
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1222.2 867 72.3
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1218.4 868 72.6
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1214.1 866 72.6
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1211.4 870 71.1
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1210.3 866 72.7
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1209.5 868 71.0
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1202.2 865 71.1
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1200.7 865 70.8
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1200.3 865 71.8
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1199.9 874 70.6
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1198.0 866 72.1
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1195.3 866 70.3
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1190.6 867 70.9
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1189.5 864 69.8
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1188.7 866 69.7
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1187.2 867 70.8
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1185.2 866 70.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1181.8 866 69.5
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1174.1 867 70.1
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1169.1 825 71.3
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1162.9 866 69.3
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1161.7 871 69.3
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1157.1 882 68.4
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1156.4 866 69.1
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1155.6 877 69.0
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1154.4 869 68.6
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1148.7 866 68.1
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1147.5 868 68.2
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1146.3 869 69.3
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1123.2 864 68.2
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1120.9 863 67.9
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1119.4 872 67.2
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1117.8 867 67.8
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1117.4 864 67.9
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1117.1 850 68.5
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1115.9 863 67.2
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1115.1 875 66.3
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 0.0e+00 1111.7 867 66.9
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1102.8 866 65.1
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1102.4 865 66.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1101.3 849 67.5
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 0.0e+00 1099.0 877 66.4
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 0.0e+00 1096.3 874 65.1
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 6.0e-312 1073.9 850 66.5
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 7.7e-310 1067.0 873 64.7
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 5.0e-309 1064.3 878 62.3
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 3.2e-308 1061.6 875 63.7
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 6.1e-307 1057.4 872 63.9
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 2.0e-305 1052.4 873 63.9
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 7.5e-305 1050.4 870 63.1
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 4.5e-302 1041.2 865 62.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 5.9e-302 1040.8 871 62.8
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 5.9e-302 1040.8 871 63.0
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 871 63.0
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.9e-300 1035.8 870 62.4
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.6e-299 1032.7 754 71.0
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.7e-299 1031.9 876 62.2
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.0e-298 1030.0 913 60.4
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 2.0e-297 1025.8 808 67.5
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 3.4e-297 1025.0 856 63.3
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 7.5e-297 1023.8 876 61.5
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 3.7e-296 1021.5 811 65.6
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.4e-295 1018.8 874 61.3
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 2.7e-294 1015.4 855 63.0
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 5.9e-294 1014.2 754 70.2
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 7.7e-294 1013.8 876 61.0
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 3.8e-293 1011.5 802 65.3
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 1.0e-277 960.3 835 61.0
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.7e-277 959.5 851 60.8
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 8.9e-274 947.2 811 62.4
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.2e-270 936.8 870 57.2
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 4.9e-264 914.8 873 55.0
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 1.8e-258 896.3 855 56.3
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 2.4e-255 885.9 867 55.7
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 5.6e-252 874.8 866 52.9
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 3.1e-250 869.0 811 59.8
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.5e-249 866.7 868 53.2
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 2.4e-247 859.4 693 66.5
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 2.1e-246 856.3 650 68.0
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 4.9e-240 835.1 859 53.9
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 2.4e-210 736.5 754 52.0
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.7e-192 677.2 522 67.8
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.8e-181 640.6 730 49.9
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 4.7e-158 562.8 439 65.4
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.2e-140 505.0 841 37.3
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 9.2e-138 495.4 876 35.7
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 4.0e-133 479.9 856 37.1
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 2.7e-113 414.1 323 65.9
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 7.9e-105 386.0 999 30.2
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.1e-65 255.0 189 67.7
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 5.4e-29 134.0 100 69.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 7.8e-28 130.2 90 70.0
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.2e-20 106.3 65 75.4
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 2.1e-20 105.5 910 20.4
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 3.9e-19 101.3 63 76.2
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 3.1e-16 91.7 57 73.7
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 9.9e-15 86.7 86 55.8
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.7e-14 85.9 66 63.6
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 2.4e-13 82.0 65 58.5
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.2e-12 79.7 57 73.7
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.5e-12 78.2 57 68.4
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.4e-08 65.5 101 47.5
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 4.5e-07 61.2 535 21.1
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.7e-06 59.3 42 64.3
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 1.7e-06 59.3 47 61.7
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.7e-06 59.3 109 36.7
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 2.2e-06 58.9 44 61.4


User provided reference genes

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