Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.4e-53 211.5 111 100.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.9e-43 179.1 109 89.0
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.2e-39 164.1 111 82.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.1e-34 149.1 114 78.1
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.6e-32 141.0 108 72.2
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.4e-29 131.7 104 67.3
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.8e-28 128.3 109 64.2
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.8e-28 128.3 109 64.2
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-27 126.3 106 66.0
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.1e-26 122.5 109 60.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.7e-26 122.1 106 64.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-26 121.3 106 67.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 7.9e-26 120.6 108 58.3
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.3e-25 119.0 105 62.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.7e-25 117.5 105 61.9
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-25 117.5 108 61.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.7e-25 117.5 108 57.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 8.7e-25 117.1 109 61.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.1e-24 116.7 106 65.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.5e-24 116.3 108 60.2
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.3e-24 115.2 108 57.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 5.6e-24 114.4 108 57.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-23 113.2 108 59.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.6e-23 112.8 112 58.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.4e-22 109.0 104 58.7
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.0e-22 108.2 108 53.7
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 9.0e-22 107.1 109 54.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 9.0e-22 107.1 108 54.6
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.2e-21 106.7 109 58.7
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.0e-21 105.9 108 57.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.0e-21 105.9 106 60.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.5e-21 104.8 108 52.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.6e-21 104.0 98 54.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.6e-21 104.0 98 54.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.7e-20 102.8 112 51.8
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.9e-20 102.1 98 54.1
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.8e-20 101.7 109 57.8
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 6.5e-20 100.9 114 47.4
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 8.4e-20 100.5 106 54.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.9e-19 99.4 90 64.4
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.9e-19 99.4 90 64.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 7.1e-19 97.4 110 52.7
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.1e-19 97.4 104 55.8
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.2e-18 96.7 112 50.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.7e-18 95.5 97 59.8
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.7e-18 95.5 110 54.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.7e-18 95.5 107 56.1
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.6e-18 94.7 105 51.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.6e-18 94.7 103 55.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.9e-18 94.0 100 55.0
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.3e-17 93.2 101 54.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.8e-17 92.8 115 47.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.8e-17 92.8 108 50.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.8e-17 92.8 111 50.5
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.3e-17 92.4 110 53.6
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.3e-17 92.4 110 52.7
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.9e-17 91.7 97 51.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.1e-16 90.1 106 50.9
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.1e-16 90.1 111 47.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.5e-16 89.7 105 49.5
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.3e-16 88.6 77 57.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.3e-16 88.2 94 54.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 4.3e-16 88.2 114 45.6
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 4.3e-16 88.2 114 45.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 9.7e-16 87.0 97 51.5
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.7e-16 87.0 96 50.0
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 9.7e-16 87.0 94 50.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.3e-15 86.7 109 48.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.2e-15 85.9 96 50.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.8e-15 85.5 100 50.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-15 85.5 77 58.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 96 50.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 6.3e-15 84.3 96 47.9
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.2e-15 84.0 99 50.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.4e-14 83.2 99 51.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.4e-14 83.2 98 51.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.1e-14 82.0 107 49.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.1e-14 82.0 97 48.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.1e-14 81.6 107 49.5
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 91 48.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-13 79.3 107 47.7
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-13 79.3 90 52.2
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.0e-13 79.3 98 51.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.6e-13 79.0 114 47.4
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.6e-13 79.0 94 45.7
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 3.4e-13 78.6 113 44.2
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.3e-12 76.6 108 43.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.7e-12 76.3 111 40.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.2e-12 75.9 112 45.5
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 5.0e-12 74.7 97 45.4
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 6.5e-12 74.3 79 49.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.1e-11 73.6 70 54.3
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.4e-11 73.2 105 45.7
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.4e-11 73.2 70 54.3
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.4e-11 73.2 113 40.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.5e-11 72.4 68 60.3
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.5e-11 72.4 105 44.8
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 3.2e-11 72.0 97 46.4
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.2e-11 72.0 78 48.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 4.2e-11 71.6 107 41.1
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 5.5e-11 71.2 111 41.4
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.5e-11 71.2 74 51.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 7.2e-11 70.9 102 48.0
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 9.4e-11 70.5 102 46.1
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.2e-10 70.1 113 42.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 105 44.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 116 40.5
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-10 69.7 105 44.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.6e-10 69.7 114 43.0
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-10 69.7 92 45.7
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-10 69.3 105 45.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.7e-10 68.9 89 50.6
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.7e-10 68.9 93 46.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.7e-10 68.9 104 43.3
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-10 68.6 105 42.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.6e-10 68.6 105 42.9
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.6e-10 68.6 104 43.3
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 4.6e-10 68.2 104 44.2
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.6e-10 68.2 115 40.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.6e-10 68.2 115 40.9
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 4.6e-10 68.2 114 42.1
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.6e-10 68.2 107 39.3
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-09 67.0 105 43.8
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-09 67.0 114 42.1
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.0e-09 67.0 68 51.5
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-09 65.9 105 43.8
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 3.0e-09 65.5 67 52.2
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 3.9e-09 65.1 105 42.9
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 2.5e-08 62.4 66 47.0
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 4.3e-08 61.6 108 38.0
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 5.7e-08 61.2 114 40.4
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 7.4e-08 60.8 70 48.6
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.7e-07 59.7 114 40.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.7e-07 59.7 84 40.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.8e-07 58.9 113 34.5
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.7e-07 58.5 115 37.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.8e-07 58.2 121 36.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.8e-07 58.2 121 36.4
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 4.8e-07 58.2 91 38.5
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.3e-07 57.8 121 35.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.3e-07 57.8 121 35.5
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 6.3e-07 57.8 99 40.4
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 8.2e-07 57.4 78 44.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.2e-07 57.4 123 35.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.4e-06 56.6 122 35.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.8e-06 56.2 116 37.9
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.8e-06 56.2 76 44.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.8e-06 56.2 76 44.7
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.8e-06 56.2 76 44.7
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.8e-06 56.2 59 59.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 4.1e-06 55.1 76 42.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 5.3e-06 54.7 89 43.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.3e-06 54.7 76 43.4
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.9e-06 54.3 78 43.6
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 6.9e-06 54.3 67 47.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 6.9e-06 54.3 79 40.5
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 6.9e-06 54.3 79 40.5
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 6.9e-06 54.3 102 37.3


User provided reference genes

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