Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 4.5e-189 664.5 339 100.0
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 1.5e-128 463.4 423 64.1
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 2.1e-122 443.0 305 73.8
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 4.6e-101 372.1 283 70.3
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 6.0e-85 318.5 316 56.3
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 1.0e-84 317.8 316 55.7
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 1.8e-84 317.0 318 56.0
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 1.5e-83 313.9 324 55.2
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 2.5e-83 313.2 316 55.4
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 2.5e-83 313.2 326 55.5
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 3.3e-83 312.8 321 55.5
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 9.0e-81 304.7 372 47.0
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 1.2e-80 304.3 370 50.5
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 2.6e-80 303.1 334 53.6
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 7.6e-80 301.6 335 54.0
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 2.2e-79 300.1 372 47.0
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 2.2e-79 300.1 331 52.6
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 2.9e-79 299.7 376 46.5
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 6.0e-77 292.0 335 52.2
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 1.0e-76 291.2 335 53.1
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 1.8e-76 290.4 332 53.9
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.7e-76 288.1 351 51.3
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 1.5e-75 287.3 351 51.3
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 4.3e-75 285.8 349 51.0
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 4.8e-74 282.3 347 51.0
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 1.8e-73 280.4 332 49.7
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 3.4e-72 276.2 315 47.9
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 1.2e-69 267.7 326 50.0
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 1.0e-68 264.6 322 49.4
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 1.3e-68 264.2 320 50.3
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 2.3e-68 263.5 320 49.4
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 3.0e-68 263.1 326 49.4
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 6.7e-68 261.9 329 49.5
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 1.1e-67 261.2 339 47.5
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 1.5e-67 260.8 313 50.8
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.3e-67 259.6 354 49.4
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 3.3e-67 259.6 314 50.0
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 2.2e-66 256.9 290 52.8
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 4.1e-65 252.7 344 48.3
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 5.3e-65 252.3 312 48.7
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 6.9e-65 251.9 347 42.9
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 1.2e-64 251.1 313 49.2
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 4.5e-64 249.2 318 47.8
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 5.9e-64 248.8 307 50.2
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 2.9e-63 246.5 314 44.9
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 5.0e-63 245.7 336 44.3
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 6.5e-63 245.4 320 47.8
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 1.4e-62 244.2 307 49.5
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 2.5e-62 243.4 217 59.4
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 9.4e-62 241.5 320 43.4
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 1.2e-61 241.1 311 46.9
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 1.6e-61 240.7 307 47.2
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 1.6e-61 240.7 357 41.5
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 1.6e-61 240.7 238 57.1
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 4.6e-61 239.2 195 61.5
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 6.1e-61 238.8 312 45.5
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 3.9e-60 236.1 174 67.8
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 5.1e-60 235.7 313 46.6
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 5.1e-60 235.7 251 53.8
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 5.1e-60 235.7 343 45.8
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 8.8e-60 235.0 324 41.4
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 8.8e-60 235.0 347 43.2
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 4.3e-59 232.6 313 46.0
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 4.8e-58 229.2 359 41.2
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 4.8e-58 229.2 354 40.7
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 8.2e-58 228.4 377 39.8
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 6.9e-57 225.3 294 47.3
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 9.1e-57 224.9 318 44.7
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 4.5e-56 222.6 372 38.4
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 5.0e-55 219.2 375 40.3
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 6.5e-55 218.8 367 38.7
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 1.1e-54 218.0 348 42.0
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 1.1e-54 218.0 358 40.2
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 1.1e-54 218.0 372 40.9
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 1.1e-54 218.0 309 45.3
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 1.2e-53 214.5 372 40.3
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 1.6e-53 214.2 311 43.4
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 2.7e-53 213.4 238 47.9
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 3.6e-53 213.0 353 40.2
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 3.6e-53 213.0 322 41.6
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 1.8e-52 210.7 197 56.3
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 6.7e-52 208.8 192 56.8
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 1.1e-51 208.0 238 50.0
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 2.6e-51 206.8 333 39.0
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 4.4e-51 206.1 193 57.0
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 9.7e-51 204.9 165 58.8
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 1.3e-50 204.5 245 46.9
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 2.8e-50 203.4 255 47.5
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 1.2e-48 198.0 199 51.3
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 3.5e-48 196.4 149 67.8
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 1.3e-47 194.5 229 51.1
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 1.7e-47 194.1 274 44.9
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 1.2e-45 188.0 379 35.4
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 1.6e-45 187.6 201 49.8
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 8.0e-45 185.3 183 49.7
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 8.8e-44 181.8 116 76.7
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 2.8e-42 176.8 221 45.7
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 3.7e-42 176.4 187 46.5
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 2.2e-39 167.2 157 59.9
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 1.8e-33 147.5 230 40.9
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 3.1e-33 146.7 211 40.3
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 4.7e-29 132.9 130 48.5
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 6.3e-26 122.5 119 45.4
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 1.8e-25 120.9 311 33.8
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 1.3e-23 114.8 210 31.0
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 4.7e-21 106.3 163 33.1
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.2e-19 101.7 215 38.1
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 8.0e-13 79.0 176 29.0
MD03G1037100 Malus domestica HOM05D006765 ORTHO05D008554 3.4e-11 73.6 164 36.6
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 3.4e-11 73.6 66 48.5
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 1.9e-09 67.8 66 56.1


User provided reference genes

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