Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 0.0e+00 1810.8 966 100.0
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 0.0e+00 1711.4 966 95.4
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 0.0e+00 1117.4 936 69.4
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.3e-286 989.9 791 71.8
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.4e-235 819.7 923 55.7
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.9e-232 810.1 979 53.3
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 5.3e-227 792.0 1010 51.7
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 3.6e-223 779.2 1025 51.5
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.6e-218 763.1 979 51.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 7.7e-218 761.5 916 52.3
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.2e-217 760.0 979 51.4
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.5e-217 758.4 979 51.6
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.6e-215 752.3 979 51.7
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 1.5e-213 747.3 960 51.8
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 3.1e-211 739.6 919 52.4
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 3.8e-209 732.6 992 49.5
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.5e-208 728.8 1006 49.2
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.1e-207 725.3 1006 49.1
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.8e-206 723.8 1008 49.6
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 5.5e-200 702.2 998 48.9
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 9.4e-200 701.4 1002 48.9
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.4e-198 697.6 990 47.5
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.9e-192 677.2 995 48.9
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 5.5e-192 675.6 989 46.6
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 2.7e-191 673.3 880 50.3
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.7e-188 664.1 998 45.5
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 4.8e-188 662.5 1004 46.9
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.1e-187 661.4 1003 46.9
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 7.7e-186 655.2 1025 45.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.1e-183 647.1 1000 46.2
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 4.7e-183 646.0 909 49.1
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 8.0e-183 645.2 993 45.6
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 4.0e-182 642.9 867 52.1
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 7.0e-179 632.1 987 44.2
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.5e-178 629.8 992 45.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 9.5e-176 621.7 986 43.9
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.1e-175 619.0 980 46.2
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 7.0e-171 605.5 1014 42.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 8.6e-169 598.6 1004 44.7
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.5e-168 597.0 997 42.2
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 4.3e-168 596.3 977 44.6
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 5.6e-168 595.9 991 45.1
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 1.2e-162 578.2 893 44.2
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.0e-161 573.5 1005 44.0
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 6.2e-159 565.8 987 42.2
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 5.2e-158 562.8 1021 44.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 6.8e-158 562.4 980 42.4
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.2e-157 561.6 978 44.1
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.5e-157 561.2 892 42.9
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 5.8e-157 559.3 1007 42.3
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 7.5e-157 558.9 986 42.6
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 3.2e-155 553.5 832 46.9
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 3.0e-153 547.0 957 43.3
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 2.3e-150 537.3 997 43.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 3.4e-149 533.5 986 42.3
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 4.9e-148 529.6 1117 39.5
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 2.4e-147 527.3 999 42.0
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.2e-147 526.9 973 40.7
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.6e-146 524.6 901 45.3
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.6e-146 523.1 761 48.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 6.6e-145 519.2 1008 41.4
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.5e-144 517.3 1006 41.7
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 4.3e-144 516.5 1001 41.2
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 8.1e-143 512.3 1009 40.1
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 3.4e-141 506.9 957 41.8
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 3.4e-141 506.9 1023 40.5
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.3e-135 488.4 1076 40.2
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.8e-134 484.6 985 40.7
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.8e-134 484.6 838 43.7
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.8e-133 479.6 986 41.0
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 2.4e-131 474.2 1015 40.0
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.7e-130 470.7 1000 40.2
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 3.5e-130 470.3 1018 39.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 3.9e-129 466.8 896 42.6
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.9e-128 464.5 972 39.7
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.1e-126 457.2 1009 39.3
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 5.3e-126 456.4 1002 40.4
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.6e-125 454.1 1020 39.4
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 3.8e-124 450.3 1022 38.6
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.1e-123 448.7 998 40.2
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 2.4e-123 447.6 1005 38.7
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.6e-122 444.9 1032 38.8
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 6.7e-121 439.5 839 40.4
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.1e-118 432.2 1004 39.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 2.6e-117 427.6 1041 37.0
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.2e-116 424.5 923 39.1
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 3.8e-116 423.7 1011 39.5
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 4.9e-116 423.3 926 40.0
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 7.1e-115 419.5 1011 38.5
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 1.2e-114 418.7 1060 37.2
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.2e-114 418.7 1022 38.5
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.5e-114 417.2 1057 37.3
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 3.5e-114 417.2 985 36.6
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 7.4e-112 409.5 891 38.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.4e-102 378.6 945 37.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.5e-101 375.2 942 38.9
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 9.4e-99 365.9 867 38.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.6e-98 364.0 852 36.6
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 6.1e-98 363.2 868 38.4
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.0e-96 358.2 997 35.1
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 5.7e-96 356.7 949 36.5
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 9.7e-96 355.9 650 44.9
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 2.6e-93 347.8 1003 34.9
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 2.6e-93 347.8 1111 33.2
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 1.1e-88 332.4 994 35.5
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 4.7e-82 310.5 1045 31.9
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.2e-75 287.7 974 33.4
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.6e-74 285.4 984 33.0
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.2e-63 248.4 433 39.3
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.7e-63 247.7 425 39.8
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.6e-61 242.3 971 31.8
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.1e-58 230.3 497 39.2
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 6.4e-55 220.3 154 75.3
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 7.0e-46 190.3 260 48.8
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.6e-45 187.6 158 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.2e-38 164.9 1103 28.4
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.5e-37 161.4 293 47.8
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 2.1e-34 152.1 239 46.9
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.6e-29 136.0 499 32.1
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.5e-29 134.8 144 57.6
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.0e-28 133.3 250 39.6
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.9e-27 129.0 160 50.0
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.6e-26 124.8 241 39.8
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.3e-25 120.9 94 70.2
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.2e-23 115.5 232 36.6
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 3.8e-23 114.8 97 63.9
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 4.6e-21 107.8 73 68.5
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 6.4e-15 87.4 834 27.6
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 6.7e-12 77.4 190 33.2
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 4.3e-11 74.7 60 66.7
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 5.6e-11 74.3 291 27.1
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.6e-10 72.8 60 65.0
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 1.3e-07 63.2 42 59.5
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.8e-07 61.6 84 52.4
MCO09G310 Micromonas commoda HOM05D005351 ORTHO05D006542 6.4e-07 60.8 215 27.9


User provided reference genes

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