Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 2.5e-53 211.8 105 100.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 6.9e-48 193.7 98 95.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 7.0e-32 140.6 103 68.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.0e-31 139.0 108 67.6
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 4.1e-24 114.8 107 61.7
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.0e-23 112.5 105 61.9
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 2.0e-23 112.5 111 58.6
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 3.5e-23 111.7 104 56.7
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.7e-22 109.4 109 54.1
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.7e-22 109.4 109 54.1
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.7e-22 109.4 109 54.1
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.2e-22 109.0 105 60.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 5.0e-22 107.8 109 53.2
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 6.5e-22 107.5 106 58.5
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 8.5e-22 107.1 109 54.1
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.5e-21 106.3 107 57.0
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.9e-21 105.9 99 55.6
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 2.5e-21 105.5 109 55.0
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 4.7e-20 101.3 96 59.4
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.4e-19 99.8 100 53.0
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 8.8e-19 97.1 95 52.6
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 8.8e-19 97.1 95 52.6
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 2.6e-18 95.5 98 52.0
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 2.6e-18 95.5 104 51.9
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 5.7e-18 94.4 104 51.0
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 9.8e-18 93.6 113 47.8
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.3e-17 93.2 92 59.8
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.3e-17 93.2 100 54.0
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.2e-17 92.4 116 46.6
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 8.3e-17 90.5 95 48.4
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-16 90.1 79 59.5
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.1e-16 90.1 95 49.5
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 2.4e-16 89.0 79 57.0
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.1e-16 88.6 77 57.1
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 7.0e-16 87.4 77 61.0
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.7e-15 85.5 94 50.0
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 7.7e-15 84.0 78 57.7
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 1.0e-14 83.6 97 45.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 5.0e-14 81.3 102 43.1
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-13 79.7 88 53.4
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.5e-13 79.7 83 57.8
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.2e-13 78.6 88 51.1
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.2e-13 78.6 70 60.0
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.2e-13 78.2 109 48.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.5e-13 77.8 106 45.3
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 5.5e-13 77.8 101 50.5
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.2e-13 77.4 90 50.0
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.2e-12 76.6 90 48.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.2e-12 76.6 90 48.9
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.6e-12 76.3 88 52.3
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.6e-12 75.1 103 45.6
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 4.7e-12 74.7 77 57.1
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 8.0e-12 73.9 63 61.9
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.0e-11 73.6 82 53.7
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 1.0e-11 73.6 101 46.5
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.4e-11 73.2 85 49.4
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 5.2e-11 71.2 75 56.0
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 6.8e-11 70.9 67 61.2
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 8.8e-11 70.5 82 52.4
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 8.8e-11 70.5 82 52.4
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 8.8e-11 70.5 98 46.9
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 1.2e-10 70.1 100 50.0
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 1.2e-10 70.1 81 50.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.2e-10 70.1 84 51.2
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.5e-10 69.7 53 67.9
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.5e-10 69.7 53 67.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.5e-10 69.7 86 47.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.5e-10 69.7 72 48.6
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.0e-10 69.3 69 56.5
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.0e-10 69.3 69 58.0
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-10 68.9 82 53.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 9.8e-10 67.0 103 46.6
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 9.8e-10 67.0 102 43.1
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 71 59.2
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.7e-09 66.2 94 47.9
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.7e-09 66.2 98 44.9
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 76 52.6
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.2e-09 65.9 109 43.1
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.2e-09 65.9 89 50.6
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.8e-09 65.5 88 46.6
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 76 52.6
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 47 70.2
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 3.7e-09 65.1 107 45.8
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 4.9e-09 64.7 89 47.2
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 6.3e-09 64.3 77 53.2
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 8.3e-09 63.9 83 49.4
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.4e-08 63.2 94 42.6
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.4e-08 63.2 77 53.2
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 1.4e-08 63.2 94 41.5
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.8e-08 62.8 81 43.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.8e-08 62.8 74 50.0
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 7.0e-08 60.8 85 49.4
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 7.0e-08 60.8 104 38.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 7.0e-08 60.8 54 63.0
ClCG10G004500 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.2e-08 60.5 80 45.0
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.6e-07 59.7 76 46.1
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 2.0e-07 59.3 92 40.2
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.5e-07 58.5 101 39.6
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 7.7e-07 57.4 75 50.7
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.0e-06 57.0 103 36.9
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.7e-06 56.2 113 37.2
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 2.9e-06 55.5 87 42.5
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.8e-06 55.1 96 38.5
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.0e-06 54.7 72 44.4
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 6.6e-06 54.3 98 38.8
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 8.6e-06 53.9 36 69.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 8.6e-06 53.9 102 39.2


User provided reference genes

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