Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 1.6e-225 785.8 417 100.0
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 3.2e-213 745.0 417 94.2
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 6.9e-115 418.3 377 63.1
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 1.8e-70 270.8 418 42.6
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 2.0e-69 267.3 419 42.2
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 3.3e-69 266.5 425 42.4
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 2.2e-68 263.8 240 58.3
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 3.7e-68 263.1 423 40.4
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 8.2e-68 261.9 240 57.9
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 1.6e-66 257.7 275 50.5
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 5.9e-66 255.8 387 43.2
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 5.9e-66 255.8 387 43.9
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 1.9e-64 250.8 275 51.3
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 2.5e-64 250.4 498 36.9
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 7.2e-64 248.8 388 42.5
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 3.6e-63 246.5 263 51.7
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 4.4e-61 239.6 349 42.1
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 4.4e-61 239.6 337 46.6
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 1.7e-60 237.7 407 39.6
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 3.7e-60 236.5 388 39.2
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 4.8e-60 236.1 439 38.0
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 6.3e-60 235.7 310 46.1
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 2.4e-59 233.8 368 43.8
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 7.0e-59 232.3 345 44.1
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 2.0e-58 230.7 364 41.8
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 3.5e-58 229.9 373 41.3
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 4.5e-58 229.6 413 38.5
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 3.8e-57 226.5 407 38.8
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 3.8e-57 226.5 396 40.2
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.5e-56 224.6 356 40.4
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 9.4e-56 221.9 256 47.7
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.6e-55 221.1 355 43.4
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 6.1e-55 219.2 392 38.8
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 8.0e-55 218.8 309 44.3
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 2.3e-54 217.2 325 43.7
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 7.5e-53 212.2 378 41.3
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 1.7e-52 211.1 237 48.1
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 2.7e-50 203.8 348 42.2
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 3.2e-48 196.8 307 42.7
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 2.6e-45 187.2 374 35.8
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 7.5e-45 185.7 227 44.1
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 8.3e-44 182.2 244 43.4
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 5.4e-43 179.5 246 43.1
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 3.5e-42 176.8 238 45.0
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 2.3e-41 174.1 252 42.1
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 2.9e-41 173.7 356 36.5
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 2.9e-41 173.7 225 44.9
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 1.5e-40 171.4 261 42.9
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 1.5e-40 171.4 248 42.3
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 2.5e-40 170.6 256 42.6
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 3.3e-40 170.2 248 42.7
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 5.2e-38 162.9 363 33.1
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.2e-38 162.9 381 36.0
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 8.9e-38 162.2 299 35.8
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 5.8e-37 159.5 342 36.3
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 8.3e-36 155.6 287 37.3
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 2.4e-35 154.1 134 56.0
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 7.0e-35 152.5 380 34.7
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 2.7e-34 150.6 365 35.1
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 3.5e-34 150.2 148 53.4
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 6.0e-34 149.4 256 36.7
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 6.0e-34 149.4 142 52.1
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.3e-33 148.3 122 57.4
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 1.7e-33 147.9 341 33.7
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.7e-33 147.9 146 50.7
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 3.0e-33 147.1 146 51.4
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 6.6e-33 146.0 165 46.1
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 6.6e-33 146.0 146 52.1
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.9e-32 144.4 146 50.0
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 3.3e-32 143.7 149 51.0
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 6.2e-31 139.4 148 50.0
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 3.1e-30 137.1 266 33.8
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 4.9e-28 129.8 228 36.4
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 6.4e-28 129.4 245 37.6
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 1.9e-27 127.9 203 35.0
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 7.3e-24 115.9 368 26.6
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 6.2e-23 112.8 233 35.2
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 6.2e-23 112.8 83 63.9
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 3.1e-22 110.5 233 34.8
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 4.0e-22 110.2 305 30.5
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 2.6e-21 107.5 339 28.0
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 1.4e-19 101.7 222 35.6
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 3.1e-14 84.0 226 35.0
HPP92_001092 Vanilla planifolia HOM05D007736 ORTHO05D009783 5.4e-11 73.2 225 32.0
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 1.2e-10 72.0 191 34.6
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 1.6e-10 71.6 358 29.3


User provided reference genes

Program Settings