Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.0e-263 910.2 438 100.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.2e-62 243.4 428 35.5
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.6e-61 241.1 424 35.4
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.6e-61 241.1 435 34.3
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.0e-60 238.4 418 34.2
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 8.7e-60 235.3 427 35.4
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 5.6e-59 232.6 418 35.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 9.6e-59 231.9 421 34.2
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 9.6e-59 231.9 418 34.9
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.3e-58 231.5 428 34.6
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.3e-58 231.5 430 35.3
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.6e-58 231.1 431 33.4
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.1e-58 230.7 417 35.5
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.1e-58 230.7 417 35.5
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.1e-58 230.7 413 35.1
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.8e-58 230.3 418 34.9
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 2.8e-58 230.3 428 34.1
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 3.6e-58 229.9 410 34.9
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 3.6e-58 229.9 418 34.7
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 6.2e-58 229.2 423 34.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 8.1e-58 228.8 424 34.9
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.1e-57 228.4 440 34.5
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.1e-57 228.4 423 33.8
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.1e-57 228.4 418 34.9
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.1e-57 228.4 420 34.3
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.1e-57 228.4 411 36.3
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.4e-57 228.0 381 34.9
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.4e-57 228.0 415 35.9
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.4e-57 228.0 419 34.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.4e-57 228.0 426 34.3
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.8e-57 227.6 381 34.9
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.8e-57 227.6 419 34.1
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 1.8e-57 227.6 419 34.1
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.8e-57 227.6 424 35.1
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.8e-57 227.6 411 34.3
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.4e-57 227.3 424 34.4
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.4e-57 227.3 415 33.7
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.1e-57 226.9 415 35.9
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 3.1e-57 226.9 422 35.3
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 3.1e-57 226.9 426 34.3
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.0e-57 226.5 417 34.8
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-57 226.5 419 34.1
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-57 226.5 419 34.1
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-57 226.5 419 34.1
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.3e-57 226.1 416 34.4
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 6.9e-57 225.7 406 35.5
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 6.9e-57 225.7 427 33.7
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 9.0e-57 225.3 431 33.6
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.0e-57 225.3 415 35.9
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 9.0e-57 225.3 419 34.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 9.0e-57 225.3 423 35.5
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.2e-56 224.9 431 33.2
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.2e-56 224.9 446 33.4
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.5e-56 224.6 410 34.6
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.5e-56 224.6 435 33.1
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.5e-56 224.6 426 33.6
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 1.5e-56 224.6 426 33.3
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.0e-56 224.2 432 34.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.0e-56 224.2 442 33.9
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.6e-56 223.8 430 33.7
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.6e-56 223.8 417 33.6
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.4e-56 223.0 446 33.4
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.8e-56 222.6 406 33.7
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.8e-56 222.6 406 33.7
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.6e-56 222.2 426 33.6
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 7.6e-56 222.2 390 34.9
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 7.6e-56 222.2 418 34.0
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.3e-55 221.5 422 33.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.3e-55 221.5 441 33.3
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.7e-55 221.1 417 34.3
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.7e-55 221.1 413 33.4
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.7e-55 221.1 437 33.9
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.7e-55 221.1 449 33.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 2.2e-55 220.7 422 34.1
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.8e-55 219.9 419 33.2
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.8e-55 219.9 420 33.6
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 4.9e-55 219.5 412 33.5
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 6.4e-55 219.2 406 33.5
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 6.4e-55 219.2 406 33.5
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 6.4e-55 219.2 461 31.0
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 8.4e-55 218.8 416 33.9
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 8.4e-55 218.8 413 33.9
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 8.4e-55 218.8 426 33.6
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.1e-54 218.4 424 34.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.9e-54 217.6 420 32.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 2.4e-54 217.2 423 33.6
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.4e-54 217.2 436 33.5
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.2e-54 216.9 422 33.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 7.1e-54 215.7 423 33.6
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 7.1e-54 215.7 416 32.7
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.2e-53 214.9 410 32.9
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.2e-53 214.9 407 32.9
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.6e-53 214.5 410 32.9
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.7e-53 213.8 422 33.2
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 4.6e-53 213.0 412 33.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.0e-52 211.8 416 32.5
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-52 211.8 422 33.2
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.3e-52 211.5 410 32.0
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.5e-51 207.2 416 32.0
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.6e-50 204.5 508 29.7
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.6e-50 204.5 515 29.3
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 3.6e-50 203.4 518 28.6
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.1e-49 201.8 493 29.8
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.4e-49 201.4 361 36.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 5.3e-49 199.5 436 31.2
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 2.6e-48 197.2 324 36.4
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.8e-48 196.1 533 27.8
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 9.9e-48 195.3 361 35.5
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.9e-47 193.7 361 33.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 4.9e-47 193.0 355 33.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.9e-46 191.0 415 30.8
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.1e-45 187.6 365 32.9
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.7e-45 187.2 407 31.4
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 5.1e-44 183.0 436 30.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 8.7e-44 182.2 436 30.5
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 8.7e-44 182.2 394 30.5
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.5e-43 180.6 461 29.7
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 8.1e-42 175.6 309 33.7
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-41 173.7 271 37.6
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.2e-39 167.5 358 31.8
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 3.8e-39 166.8 302 34.1
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 4.9e-39 166.4 422 30.3
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 5.5e-38 162.9 258 37.2
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 7.9e-37 159.1 268 37.3
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.5e-35 154.8 301 31.9
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 1.9e-35 154.5 258 36.4
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.3e-33 146.4 262 35.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.7e-31 141.4 260 35.0
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 2.2e-31 141.0 252 34.1
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-30 138.7 266 34.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-30 137.9 197 38.1
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 6.9e-25 119.4 228 29.8
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-20 103.6 134 40.3
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-20 103.6 134 40.3
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.8e-18 97.4 134 39.6
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-12 78.6 142 35.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-11 75.5 103 37.9
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.3e-11 73.9 76 47.4
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.7e-11 73.2 69 52.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.7e-11 73.2 69 52.2
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.1e-09 68.9 118 35.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-09 68.6 118 35.6
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.8e-09 68.2 141 30.5
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.6e-08 65.1 85 36.5
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 3.2e-06 57.4 100 34.0


User provided reference genes

Program Settings