Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021794 Carpinus fangiana HOM05D003515 ORTHO05D004347 0.0e+00 1807.0 920 100.0
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 5.3e-35 154.1 451 28.8
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.2e-34 152.9 348 33.0
AagrBONN_evm.TU.Sc2ySwM_344.1043 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.6e-34 152.5 335 32.8
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.5e-34 151.4 470 28.1
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.0e-33 149.8 343 31.8
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.0e-33 149.8 345 30.7
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 1.7e-33 149.1 345 32.2
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 3.8e-33 147.9 359 30.4
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 3.8e-33 147.9 470 27.9
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 6.5e-33 147.1 359 31.5
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 8.5e-33 146.7 343 31.2
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 8.5e-33 146.7 440 29.5
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.5e-32 146.0 451 29.5
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.5e-32 146.0 345 32.2
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 1.5e-32 146.0 429 29.4
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 1.5e-32 146.0 411 30.7
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.9e-32 145.6 359 30.6
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.9e-32 145.6 352 30.4
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 2.5e-32 145.2 345 32.5
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 4.2e-32 144.4 429 29.4
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 4.2e-32 144.4 437 30.2
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 4.2e-32 144.4 421 29.7
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 5.5e-32 144.1 343 30.9
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 5.5e-32 144.1 420 29.3
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 5.5e-32 144.1 345 31.0
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 5.5e-32 144.1 410 29.8
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 7.2e-32 143.7 345 32.2
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 7.2e-32 143.7 348 32.8
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 7.2e-32 143.7 343 31.5
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 7.2e-32 143.7 345 31.6
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 9.4e-32 143.3 343 32.1
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 1.2e-31 142.9 345 31.0
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.2e-31 142.9 450 28.2
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.2e-31 142.9 345 31.0
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.2e-31 142.9 509 27.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 1.2e-31 142.9 343 31.2
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 1.6e-31 142.5 343 30.9
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 1.6e-31 142.5 345 31.3
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 1.6e-31 142.5 335 31.6
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.6e-31 142.5 414 30.9
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.6e-31 142.5 344 32.6
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 2.1e-31 142.1 629 25.6
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 2.1e-31 142.1 345 31.0
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 3.6e-31 141.4 345 30.7
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 3.6e-31 141.4 351 31.3
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 4.7e-31 141.0 345 31.0
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 4.7e-31 141.0 411 29.2
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 6.1e-31 140.6 347 30.5
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 6.1e-31 140.6 343 31.8
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 8.0e-31 140.2 343 30.6
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 1.0e-30 139.8 353 31.2
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.0e-30 139.8 353 30.6
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.0e-30 139.8 345 30.7
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.0e-30 139.8 335 31.0
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.0e-30 139.8 388 29.4
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.4e-30 139.4 347 30.5
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 1.4e-30 139.4 362 29.8
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.4e-30 139.4 427 28.3
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.4e-30 139.4 343 31.2
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 1.4e-30 139.4 343 31.5
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.4e-30 139.4 343 30.6
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 1.4e-30 139.4 343 32.1
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 1.8e-30 139.0 550 26.7
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 1.8e-30 139.0 337 30.6
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 1.8e-30 139.0 483 27.5
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 2.3e-30 138.7 347 30.3
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 2.3e-30 138.7 354 31.1
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 2.3e-30 138.7 367 30.2
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 2.3e-30 138.7 343 31.5
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 4.0e-30 137.9 558 27.1
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 4.0e-30 137.9 379 30.1
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 5.2e-30 137.5 517 26.9
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 6.7e-30 137.1 411 28.2
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 6.7e-30 137.1 351 30.5
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.8e-30 136.7 341 31.7
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 8.8e-30 136.7 603 25.4
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 8.8e-30 136.7 493 27.2
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 2.0e-29 135.6 568 26.9
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 3.3e-29 134.8 495 27.1
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 4.4e-29 134.4 348 29.9
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 4.4e-29 134.4 398 29.4
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 5.7e-29 134.0 452 28.1
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 5.7e-29 134.0 374 29.9
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 7.5e-29 133.7 566 25.8
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 9.7e-29 133.3 414 30.7
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.7e-28 132.5 351 31.9
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 2.2e-28 132.1 349 30.4
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 3.7e-28 131.3 343 30.0
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.4e-27 129.4 298 32.6
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 1.8e-27 129.0 343 30.3
Cre07.g338602 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 2.4e-27 128.6 278 32.0
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 7.0e-27 127.1 383 30.3
Mapoly0044s0119 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.2e-26 126.3 338 28.7
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.6e-26 125.9 351 29.3
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 2.7e-26 125.2 338 29.0
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 4.5e-26 124.4 202 36.6
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 5.9e-26 124.0 260 31.5
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 1.0e-25 123.2 274 31.0
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 2.2e-25 122.1 355 28.7
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 2.2e-25 122.1 222 34.2
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 2.9e-25 121.7 291 30.6
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 5.0e-25 120.9 427 28.8
PRCOL_00005783 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 8.5e-25 120.2 515 26.6
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 2.1e-23 115.5 292 32.2
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.7e-23 115.2 341 30.5
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 3.6e-23 114.8 268 32.1
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 6.1e-23 114.0 260 31.2
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 3.0e-22 111.7 207 34.3
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 5.2e-22 110.9 257 30.4
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 5.2e-22 110.9 257 30.4
Cre03.g148050 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 6.8e-22 110.5 210 33.8
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 2.0e-21 109.0 224 31.7
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 2.0e-21 109.0 224 31.7
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 2.0e-21 109.0 224 31.7
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 2.0e-21 109.0 224 31.7
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 2.0e-21 109.0 224 31.7
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 3.4e-21 108.2 493 25.8
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 5.7e-21 107.5 224 31.2
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 1.3e-20 106.3 298 30.2
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 1.8e-19 102.4 231 31.2
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.4e-19 102.1 367 29.7
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 2.0e-18 99.0 167 34.7
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 8.0e-15 87.0 161 32.9
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-14 86.7 389 27.8
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 1.4e-11 76.3 172 31.4
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.8e-11 75.9 335 23.9
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 1.2e-10 73.2 206 29.6
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-09 68.9 239 28.0
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 8.6e-09 67.0 341 24.0
Mapoly0216s0004 Marchantia polymorpha HOM05D004852 ORTHO05D006128 1.1e-08 66.6 191 29.3
SEGI_36625 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 2.5e-08 65.5 135 31.1
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 4.3e-08 64.7 76 43.4
SMO222G0016 Selaginella moellendorffii HOM05D010282 ORTHO05D004347 3.6e-07 61.6 134 31.3
Pp3c22_4740 Physcomitrium patens HOM05D004852 ORTHO05D006128 1.4e-06 59.7 179 25.7
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 4.0e-06 58.2 193 28.0
Cc02_g19870 Coffea canephora HOM05D002857 ORTHO05D007919 6.8e-06 57.4 445 21.6
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 8.9e-06 57.0 182 26.9


User provided reference genes

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