Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.6e-297 1024.6 514 100.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 9.9e-23 112.5 211 34.6
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 3.8e-22 110.5 252 32.1
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.4e-21 108.6 246 30.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.4e-21 108.6 185 33.0
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.2e-21 107.1 244 32.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 5.5e-21 106.7 247 30.8
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 9.3e-21 105.9 211 31.8
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.1e-20 104.8 209 31.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 2.1e-20 104.8 257 28.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.7e-20 104.4 235 31.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.5e-20 104.0 250 29.6
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.5e-20 104.0 211 30.3
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.6e-20 103.6 250 30.0
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 7.9e-20 102.8 208 31.2
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.3e-19 102.1 212 31.1
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.3e-19 102.1 220 32.7
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.8e-19 101.7 255 31.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.8e-19 101.7 185 33.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 2.3e-19 101.3 190 31.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.0e-19 100.9 204 30.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.0e-19 100.9 208 31.7
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.9e-19 100.5 234 32.1
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 5.1e-19 100.1 249 29.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.1e-19 100.1 209 31.1
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 5.1e-19 100.1 206 30.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 5.1e-19 100.1 186 32.8
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.7e-19 99.8 238 31.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 6.7e-19 99.8 212 31.6
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 8.7e-19 99.4 208 32.2
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 8.7e-19 99.4 185 31.4
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 8.7e-19 99.4 216 30.6
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.1e-18 99.0 190 31.6
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.1e-18 99.0 224 31.7
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.1e-18 99.0 246 31.3
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-18 98.6 253 28.5
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.5e-18 98.6 216 30.6
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.9e-18 98.2 248 29.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.9e-18 98.2 253 28.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.9e-18 98.2 253 28.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.9e-18 98.2 253 28.1
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.9e-18 98.2 212 30.7
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.9e-18 98.2 217 30.9
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.5e-18 97.8 244 28.7
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.3e-18 97.4 250 30.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.3e-18 97.1 253 29.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.3e-18 97.1 216 31.0
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.3e-18 97.1 216 30.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 4.3e-18 97.1 208 30.3
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 5.6e-18 96.7 211 29.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 5.6e-18 96.7 253 28.1
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.6e-18 96.7 204 28.9
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.6e-18 96.7 252 29.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.6e-18 96.7 211 30.8
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.6e-18 96.7 223 30.0
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 5.6e-18 96.7 208 30.8
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 7.4e-18 96.3 220 30.0
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.4e-18 96.3 208 31.7
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.4e-18 96.3 252 27.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 7.4e-18 96.3 208 30.8
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 9.6e-18 95.9 253 27.7
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 9.6e-18 95.9 211 29.4
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-17 95.5 185 32.4
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.6e-17 95.1 212 30.2
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-17 95.1 212 29.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.6e-17 95.1 199 30.7
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.6e-17 95.1 212 30.2
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.1e-17 94.7 205 29.8
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.1e-17 94.7 249 28.9
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 2.1e-17 94.7 247 27.5
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.1e-17 94.7 208 31.2
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.8e-17 94.4 206 29.6
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.7e-17 94.0 227 30.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.7e-17 94.0 247 27.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.8e-17 93.6 203 30.0
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 4.8e-17 93.6 242 27.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.2e-17 93.2 204 28.9
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 6.2e-17 93.2 213 29.6
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 8.1e-17 92.8 225 29.3
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 8.1e-17 92.8 225 29.3
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 8.1e-17 92.8 185 30.8
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 8.1e-17 92.8 225 28.9
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.1e-16 92.4 205 29.3
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.1e-16 92.4 215 28.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-16 92.4 216 30.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.1e-16 92.4 216 30.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.1e-16 92.4 216 30.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.4e-16 92.0 208 29.8
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.4e-16 92.0 247 27.9
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-16 91.7 184 32.1
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.8e-16 91.7 212 29.2
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.4e-16 91.3 174 32.2
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 2.4e-16 91.3 210 29.5
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.4e-16 91.3 243 28.0
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.4e-16 91.3 245 29.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.1e-16 90.9 208 29.3
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.1e-16 90.9 186 30.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 3.1e-16 90.9 207 28.5
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 5.3e-16 90.1 218 28.4
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 5.3e-16 90.1 218 28.4
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 5.3e-16 90.1 188 34.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.3e-16 90.1 179 30.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 6.9e-16 89.7 205 28.8
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 6.9e-16 89.7 172 33.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 6.9e-16 89.7 171 35.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 6.9e-16 89.7 175 31.4
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 9.0e-16 89.4 184 31.5
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.0e-16 89.4 185 30.3
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 9.0e-16 89.4 220 30.9
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 9.0e-16 89.4 247 27.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-15 89.0 184 31.5
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-15 89.0 247 27.1
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-15 88.6 211 28.4
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.5e-15 88.6 208 29.3
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.0e-15 88.2 205 28.8
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.6e-15 87.8 236 28.4
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 5.8e-15 86.7 269 25.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.8e-15 86.7 185 29.2
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-14 85.9 248 27.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-14 85.5 248 26.6
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.7e-14 85.1 169 32.5
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.2e-14 84.7 204 27.5
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 2.9e-14 84.3 154 35.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-14 84.3 154 35.1
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.9e-14 83.6 208 27.4
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 4.9e-14 83.6 183 27.9
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.1e-13 82.4 184 28.8
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.5e-13 80.1 169 31.4
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.6e-12 78.6 184 31.5
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.1e-12 78.2 171 29.8
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.3e-11 75.5 208 26.4
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.9e-11 73.9 165 29.7
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-10 72.4 218 25.2
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-10 72.4 218 25.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.5e-10 72.0 117 33.3
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-10 71.6 174 27.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.5e-10 71.2 127 35.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-10 70.5 218 24.8
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-10 70.5 218 24.8
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.3e-09 68.9 114 31.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.6e-09 68.6 129 35.7
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 6.9e-08 63.2 190 27.9
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 4.5e-07 60.5 155 29.7
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-06 58.5 156 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.9e-06 57.8 178 29.2


User provided reference genes

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