Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 0.0e+00 1117.4 564 100.0
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.8e-60 236.9 486 33.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 8.5e-60 235.7 450 33.1
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.2e-59 233.8 464 33.4
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.7e-58 230.7 511 31.3
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.8e-57 228.0 457 33.3
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 4.0e-57 226.9 463 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.8e-57 225.7 487 34.1
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.0e-56 224.6 454 33.9
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.6e-56 224.2 464 32.8
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.6e-56 224.2 454 33.0
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.4e-56 223.8 488 32.4
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.7e-56 223.0 463 32.8
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 7.5e-56 222.6 462 32.0
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 7.5e-56 222.6 454 33.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.7e-55 221.5 501 33.5
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.2e-55 221.1 454 33.9
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.7e-55 220.3 464 32.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.7e-55 220.3 466 33.5
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 4.8e-55 219.9 462 32.9
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.8e-55 219.9 456 32.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 6.3e-55 219.5 520 31.7
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 6.3e-55 219.5 462 32.0
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 8.3e-55 219.2 468 33.1
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 8.3e-55 219.2 454 33.0
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.1e-54 218.8 500 32.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.1e-54 218.8 490 31.6
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.8e-54 218.0 455 32.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.4e-54 217.6 468 32.7
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.4e-54 217.6 465 32.0
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.1e-54 217.2 493 32.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.1e-54 217.2 462 32.5
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.1e-54 216.9 493 32.0
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.4e-54 216.5 466 32.8
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.2e-53 215.3 462 31.8
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.6e-53 214.9 438 34.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.7e-53 214.2 462 33.8
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.5e-53 213.8 464 31.7
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.5e-53 213.4 449 34.5
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 4.5e-53 213.4 455 33.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 4.5e-53 213.4 464 31.7
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.7e-52 211.5 528 30.7
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-52 211.5 462 32.0
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-52 211.5 481 31.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.3e-52 211.1 514 31.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.3e-52 211.1 498 31.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-52 211.1 472 32.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.9e-52 210.7 465 32.0
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 6.6e-52 209.5 456 33.8
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 6.6e-52 209.5 474 33.3
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 6.6e-52 209.5 473 32.6
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 6.6e-52 209.5 457 33.3
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 8.6e-52 209.1 518 32.0
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 8.6e-52 209.1 500 31.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 8.6e-52 209.1 460 32.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.5e-51 208.4 458 33.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.5e-51 208.4 540 30.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.9e-51 208.0 499 30.9
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.9e-51 208.0 519 31.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.5e-51 207.6 478 31.4
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.3e-51 207.2 519 31.8
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.2e-51 206.8 500 31.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.5e-51 206.5 531 32.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 9.5e-51 205.7 474 33.1
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 9.5e-51 205.7 474 33.1
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 9.5e-51 205.7 532 32.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.1e-50 204.5 474 32.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 2.1e-50 204.5 474 32.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 2.1e-50 204.5 474 32.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 2.1e-50 204.5 558 31.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.1e-50 204.5 485 32.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.1e-50 204.5 482 32.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.6e-50 203.8 515 32.4
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.6e-50 203.8 558 30.3
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.6e-50 203.8 472 31.8
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 6.1e-50 203.0 545 31.0
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 6.1e-50 203.0 545 31.0
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.1e-50 203.0 471 31.2
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 8.0e-50 202.6 541 30.9
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 8.0e-50 202.6 541 30.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 8.0e-50 202.6 465 31.6
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.0e-49 202.2 547 30.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.4e-49 201.8 474 32.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.8e-49 201.4 499 31.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.8e-49 201.4 515 31.3
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.8e-49 201.4 514 30.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.3e-49 201.1 455 32.3
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.0e-49 200.7 514 30.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 5.2e-49 199.9 492 31.9
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 5.2e-49 199.9 492 31.9
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 5.2e-49 199.9 539 30.2
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.8e-49 199.5 499 32.1
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.9e-49 199.1 447 32.9
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.0e-48 198.0 456 30.9
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.6e-48 197.6 506 32.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.4e-48 197.2 499 31.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 7.5e-48 196.1 453 30.0
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 7.5e-48 196.1 434 33.4
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.7e-47 194.9 504 31.5
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.2e-47 194.5 492 30.5
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.2e-47 194.5 486 31.3
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 3.7e-47 193.7 468 32.3
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.3e-47 193.0 497 30.2
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-46 191.4 497 31.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.8e-46 191.4 471 31.4
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 4.1e-46 190.3 462 31.4
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-45 188.7 525 29.9
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.6e-45 188.3 317 36.0
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 7.8e-45 186.0 516 28.3
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.0e-44 185.7 436 31.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.9e-44 184.1 528 30.1
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.5e-43 181.8 473 30.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.5e-43 181.0 482 29.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 7.3e-43 179.5 458 31.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.1e-42 176.4 549 28.8
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 8.0e-42 176.0 312 34.9
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 3.1e-41 174.1 537 28.9
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 8.9e-41 172.6 460 28.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.0e-40 171.4 460 31.5
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.6e-40 171.0 502 29.9
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.6e-40 171.0 418 31.8
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.3e-39 168.7 400 31.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.4e-38 164.5 482 30.1
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.6e-37 161.8 480 29.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.0e-37 161.4 566 26.0
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.0e-37 159.8 385 31.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.3e-36 158.7 286 35.3
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.3e-36 157.9 459 29.4
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.9e-36 157.1 386 31.6
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.3e-35 153.7 523 28.1
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 5.6e-35 153.3 163 44.2
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.1e-34 151.4 520 28.5
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.1e-34 151.4 409 30.1
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.8e-34 151.0 458 29.3
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.3e-33 147.9 432 30.3
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.0e-32 144.8 440 27.7
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 7.5e-32 142.9 360 31.4
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 5.4e-30 136.7 567 26.6
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 7.1e-30 136.3 437 28.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 9.2e-30 136.0 195 39.5
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.7e-29 134.4 426 28.9
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.0e-29 133.3 140 43.6
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.8e-29 132.9 409 28.6
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 6.6e-28 129.8 391 29.9
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.1e-27 129.0 449 28.3
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.3e-27 126.3 384 29.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.8e-25 121.7 424 29.5
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 3.1e-25 120.9 525 26.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.9e-25 119.4 285 30.9
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.2e-24 119.0 522 26.6
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.4e-24 117.5 136 41.9
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.3e-23 115.5 584 23.1
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.2e-23 114.8 249 30.1
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.2e-23 114.8 183 33.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-20 105.9 217 32.3
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.1e-18 98.2 316 31.3
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.2e-16 92.4 325 28.0
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.1e-13 81.6 389 27.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.7e-12 76.3 96 38.5
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.9e-09 66.6 139 34.5
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.6e-08 64.7 310 26.5
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.9e-06 58.5 120 34.2


User provided reference genes

Program Settings