Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021674 Carpinus fangiana HOM05D003109 ORTHO05D003578 3.2e-289 997.7 489 100.0
AUR62025463 Chenopodium quinoa HOM05D003109 ORTHO05D003578 2.8e-14 84.3 302 26.8
FAN25G0950 Fragaria x ananassa HOM05D003109 ORTHO05D003578 6.1e-14 83.2 315 27.6
HanXRQChr10g0286421 Helianthus annuus HOM05D003109 ORTHO05D003578 1.8e-13 81.6 379 26.1
EL10Ac7g17662 Beta vulgaris HOM05D003109 ORTHO05D003578 4.0e-13 80.5 300 26.3
AUR62008776 Chenopodium quinoa HOM05D003109 ORTHO05D003578 4.0e-13 80.5 348 25.0
DCAR_003753 Daucus carota HOM05D003109 ORTHO05D003578 4.0e-13 80.5 319 27.6
Sed0014929 Sechium edule HOM05D003109 ORTHO05D003578 6.8e-13 79.7 300 28.3
BraA09t37733Z Brassica rapa HOM05D003109 ORTHO05D003578 1.2e-12 79.0 305 26.6
CARHR178180 Cardamine hirsuta HOM05D003109 ORTHO05D003578 1.2e-12 79.0 305 25.6
Thhalv10000970m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 1.5e-12 78.6 305 26.2
BcaB07g30929 Brassica carinata HOM05D003109 ORTHO05D003578 2.0e-12 78.2 305 26.6
C09p27070 Brassica napus HOM05D003109 ORTHO05D003578 2.0e-12 78.2 305 26.6
BolC9t55590H Brassica oleracea HOM05D003109 ORTHO05D003578 2.0e-12 78.2 305 26.6
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 2.6e-12 77.8 356 25.0
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 2.6e-12 77.8 346 25.7
EL10Ac7g17661 Beta vulgaris HOM05D003109 ORTHO05D003578 3.4e-12 77.4 300 26.7
AL8G14810 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 4.4e-12 77.0 298 26.2
Prupe.1G101100 Prunus persica HOM05D003109 ORTHO05D003578 4.4e-12 77.0 302 26.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 5.7e-12 76.6 305 26.2
DCAR_004346 Daucus carota HOM05D003109 ORTHO05D003578 5.7e-12 76.6 308 27.6
HanXRQChr10g0286441 Helianthus annuus HOM05D003109 ORTHO05D003578 5.7e-12 76.6 379 24.8
A06p46990 Brassica napus HOM05D003109 ORTHO05D003578 7.5e-12 76.3 305 26.2
CSS0007059 Camellia sinensis var. sinensis HOM05D003109 ORTHO05D003578 7.5e-12 76.3 384 24.2
Carub.0008s0354 Capsella rubella HOM05D003109 ORTHO05D003578 7.5e-12 76.3 305 26.6
BcaC06g31591 Brassica carinata HOM05D003109 ORTHO05D003578 9.8e-12 75.9 305 26.2
BraA06t27571Z Brassica rapa HOM05D003109 ORTHO05D003578 9.8e-12 75.9 305 26.2
Thhalv10001183m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 9.8e-12 75.9 305 25.6
RcHm_v2.0_Chr5g0021311 Rosa chinensis HOM05D003109 ORTHO05D003578 9.8e-12 75.9 310 26.8
Lsat_1_v5_gn_9_33520 Lactuca sativa HOM05D003109 ORTHO05D003578 1.3e-11 75.5 299 25.8
BraA09t37734Z Brassica rapa HOM05D003109 ORTHO05D003578 1.7e-11 75.1 311 25.4
Cre09.g389089 Chlamydomonas reinhardtii HOM05D003109 ORTHO05D003578 1.7e-11 75.1 306 26.1
Mapoly0004s0282 Marchantia polymorpha HOM05D003109 ORTHO05D003578 1.7e-11 75.1 330 26.7
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.7e-11 75.1 348 24.7
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 2.2e-11 74.7 394 24.9
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 2.9e-11 74.3 316 27.2
AT5G44720 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 2.9e-11 74.3 305 25.2
BcaC06g34519 Brassica carinata HOM05D003109 ORTHO05D003578 2.9e-11 74.3 298 25.5
C07p27620 Brassica napus HOM05D003109 ORTHO05D003578 2.9e-11 74.3 298 25.5
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.9e-11 74.3 298 25.5
MCO13G003 Micromonas commoda HOM05D003109 ORTHO05D003578 2.9e-11 74.3 298 29.2
Cc09_g05010 Coffea canephora HOM05D003109 ORTHO05D003578 3.7e-11 73.9 330 25.2
Eucgr.E04318 Eucalyptus grandis HOM05D003109 ORTHO05D003578 3.7e-11 73.9 316 26.6
Sp2g09530 Schrenkiella parvula HOM05D003109 ORTHO05D003578 3.7e-11 73.9 305 25.2
Solyc02g081880.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 3.7e-11 73.9 352 24.7
Ciclev10016066m.g Citrus clementina HOM05D003109 ORTHO05D003578 4.9e-11 73.6 312 25.3
BcaB07g30928 Brassica carinata HOM05D003109 ORTHO05D003578 6.4e-11 73.2 274 25.2
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 6.4e-11 73.2 303 27.7
FAN25G0248 Fragaria x ananassa HOM05D003109 ORTHO05D003578 6.4e-11 73.2 315 26.7
vmacro03561 Vaccinium macrocarpon HOM05D003109 ORTHO05D003578 6.4e-11 73.2 387 24.5
SMO143G0025 Selaginella moellendorffii HOM05D003109 ORTHO05D003578 1.1e-10 72.4 301 24.3
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 1.4e-10 72.0 299 25.8
FvH4_3g13081 Fragaria vesca HOM05D003109 ORTHO05D003578 1.4e-10 72.0 307 26.7
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 1.4e-10 72.0 330 24.5
THA.LOC104811863 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 1.4e-10 72.0 299 24.7
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 1.8e-10 71.6 317 26.5
Pp3c20_4970 Physcomitrium patens HOM05D003109 ORTHO05D003578 1.8e-10 71.6 307 26.7
SGA_v2.0_scaffold171G38866 Striga asiatica HOM05D003109 ORTHO05D003578 1.8e-10 71.6 306 25.5
BcaC04g21819 Brassica carinata HOM05D003109 ORTHO05D003578 2.4e-10 71.2 311 24.8
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 2.4e-10 71.2 317 26.5
BolC9t55591H Brassica oleracea HOM05D003109 ORTHO05D003578 2.4e-10 71.2 311 24.8
Duzib187G1888 Durio zibethinus HOM05D003109 ORTHO05D003578 2.4e-10 71.2 305 25.2
Os09g0560700 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 2.4e-10 71.2 304 25.7
QL10p022110 Quercus lobata HOM05D003109 ORTHO05D003578 2.4e-10 71.2 299 27.4
AagrBONN_evm.TU.Sc2ySwM_228.2820 Anthoceros agrestis HOM05D003109 ORTHO05D003578 4.1e-10 70.5 300 26.7
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 7.0e-10 69.7 296 27.4
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 9.2e-10 69.3 317 26.5
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 9.2e-10 69.3 317 26.5
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 9.2e-10 69.3 317 26.5
Lj2A342T113 Lonicera japonica HOM05D003109 ORTHO05D003578 9.2e-10 69.3 286 26.2
Manes.03G071100 Manihot esculenta HOM05D003109 ORTHO05D003578 9.2e-10 69.3 303 26.1
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 1.2e-09 68.9 313 25.6
Medtr2g035480 Medicago truncatula HOM05D003109 ORTHO05D003578 1.2e-09 68.9 324 25.0
Zm00001eb104730 Zea mays HOM05D003109 ORTHO05D003578 1.2e-09 68.9 296 25.7
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 1.6e-09 68.6 309 25.6
Zm00001eb104710 Zea mays HOM05D003109 ORTHO05D003578 1.6e-09 68.6 266 28.2
Zm00001eb104720 Zea mays HOM05D003109 ORTHO05D003578 1.6e-09 68.6 265 26.4
Glyma.09G050100 Glycine max HOM05D003109 ORTHO05D003578 2.0e-09 68.2 331 25.4
Lj6g0002854 Lotus japonicus HOM05D003109 ORTHO05D003578 2.0e-09 68.2 306 26.1
Potri.003G154900 Populus trichocarpa HOM05D003109 ORTHO05D003578 2.0e-09 68.2 299 26.8
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 2.0e-09 68.2 299 25.4
Sp2g09560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 2.7e-09 67.8 305 23.9
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.5e-09 67.4 300 25.3
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 4.6e-09 67.0 311 25.4
SMO144G0105 Selaginella moellendorffii HOM05D005437 ORTHO05D006699 4.6e-09 67.0 320 23.8
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 5.9e-09 66.6 307 24.1
ECA248G0390 Erigeron canadensis HOM05D003109 ORTHO05D003578 7.8e-09 66.2 310 24.5
Nitab4.5_0001499g0020 Nicotiana tabacum HOM05D003109 ORTHO05D003578 7.8e-09 66.2 304 25.7
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 7.8e-09 66.2 312 25.0
Medtr2g035470 Medicago truncatula HOM05D003109 ORTHO05D003578 1.0e-08 65.9 322 24.8
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 1.0e-08 65.9 309 25.9
AagrBONN_evm.TU.Sc2ySwM_362.279 Anthoceros agrestis HOM05D003109 ORTHO05D003578 1.3e-08 65.5 324 27.8
AT1G30910 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 1.3e-08 65.5 309 23.9
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 1.7e-08 65.1 309 25.6
Lj1A1150T110 Lonicera japonica HOM05D003109 ORTHO05D003578 1.7e-08 65.1 318 25.2
Sabra03G0112100 Salix brachista HOM05D003109 ORTHO05D003578 2.3e-08 64.7 308 26.0
TWI38G1552 Tripterygium wilfordii HOM05D003109 ORTHO05D003578 2.3e-08 64.7 311 25.4
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 3.0e-08 64.3 317 25.9
FAN11G0200 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.0e-08 64.3 304 25.3
Glyma.09G049900 Glycine max HOM05D003109 ORTHO05D003578 5.0e-08 63.5 313 26.2
AL1G45200 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 8.6e-08 62.8 307 25.1
Migut.M02018 Erythranthe guttata HOM05D003109 ORTHO05D003578 1.1e-07 62.4 269 26.4
TPR.G26578 Trifolium pratense HOM05D003109 ORTHO05D003578 3.3e-07 60.8 306 24.5
Psat1g150920 Pisum sativum HOM05D003109 ORTHO05D003578 2.1e-06 58.2 317 24.6
BcaC04g21820 Brassica carinata HOM05D003109 ORTHO05D003578 4.7e-06 57.0 82 37.8


User provided reference genes

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