Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021595 Carpinus fangiana HOM05D000176 ORTHO05D000106 3.6e-94 349.4 385 100.0
Haze_13472 Corylus avellana HOM05D000176 ORTHO05D000106 9.3e-58 228.4 357 92.7
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 6.1e-41 172.6 108 81.5
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 2.2e-38 164.1 102 79.4
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 3.1e-37 160.2 103 81.6
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 3.1e-37 160.2 108 74.1
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 4.1e-37 159.8 109 77.1
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 1.2e-36 158.3 108 71.3
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 4.5e-36 156.4 108 71.3
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.7e-35 154.5 108 70.4
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 1.7e-35 154.5 109 74.3
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 2.2e-35 154.1 108 71.3
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 1.1e-34 151.8 108 71.3
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 1.1e-34 151.8 109 73.4
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 1.6e-33 147.9 108 72.2
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 1.0e-32 145.2 110 70.9
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.1e-31 141.7 109 70.6
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 9.7e-31 138.7 108 63.0
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 3.1e-29 133.7 119 59.7
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 4.1e-29 133.3 108 62.0
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 9.1e-29 132.1 108 64.8
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 2.6e-28 130.6 100 68.0
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 5.9e-28 129.4 108 62.0
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 1.7e-27 127.9 99 64.6
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 3.8e-27 126.7 108 62.0
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 3.8e-27 126.7 99 65.7
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.1e-26 125.2 108 58.3
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.1e-26 125.2 108 58.3
Sc12g0003730 Simmondsia chinensis HOM05D000176 ORTHO05D000106 2.7e-25 120.6 170 43.5
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 3.6e-25 120.2 101 58.4
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 6.1e-25 119.4 99 60.6
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 8.0e-25 119.0 100 58.0
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 1.8e-24 117.9 107 58.9
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 3.9e-24 116.7 108 56.5
Actinidia28384 Actinidia chinensis HOM05D000176 ORTHO05D000106 6.7e-24 115.9 101 59.4
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.1e-23 115.2 96 63.5
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 3.3e-23 113.6 97 56.7
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 5.7e-23 112.8 99 61.6
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 1.3e-22 111.7 108 53.7
COL.COLO4_33030 Corchorus olitorius HOM05D000176 ORTHO05D000106 1.7e-22 111.3 99 59.6
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.7e-22 111.3 108 52.8
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 2.2e-22 110.9 93 59.1
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.2e-22 109.0 108 52.8
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 1.8e-21 107.8 86 59.3
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 2.4e-21 107.5 107 53.3
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-21 107.1 107 49.5
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 3.1e-21 107.1 100 56.0
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 7.0e-21 105.9 107 55.1
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 1.2e-20 105.1 107 55.1
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 2.0e-20 104.4 86 58.1
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.0e-20 104.4 86 58.1
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 5.9e-20 102.8 99 57.6
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 7.7e-20 102.4 108 49.1
SGA_v2.0_scaffold4221G54449 Striga asiatica HOM05D000176 ORTHO05D000106 1.0e-19 102.1 80 61.2
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 2.2e-19 100.9 99 58.6
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 2.9e-19 100.5 89 53.9
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 8.5e-19 99.0 81 60.5
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 4.2e-18 96.7 100 54.0
DCAR_021305 Daucus carota HOM05D000176 ORTHO05D000106 7.2e-18 95.9 82 52.4
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 2.7e-17 94.0 96 51.0
Dinv05007 Davidia involucrata HOM05D000176 ORTHO05D000106 2.3e-16 90.9 71 60.6
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 7.5e-15 85.9 111 43.2
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 8.2e-14 82.4 93 50.5
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 5.3e-13 79.7 99 49.5
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 9.1e-13 79.0 100 47.0
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 9.1e-13 79.0 100 47.0
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 9.1e-13 79.0 100 47.0
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 9.1e-13 79.0 100 47.0
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.2e-12 78.6 99 48.5
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 2.0e-12 77.8 86 55.8
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 4.5e-12 76.6 99 48.5
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.0e-11 75.5 94 45.7
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.0e-11 75.5 95 45.3
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.7e-11 74.7 94 45.7
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.1e-10 72.0 96 46.9
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.9e-10 71.2 96 43.8
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 2.5e-10 70.9 65 46.2
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 5.5e-10 69.7 61 60.7
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.6e-09 68.2 94 43.6
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 2.7e-09 67.4 60 51.7
SGA_v2.0_scaffold105G30307 Striga asiatica HOM05D000176 ORTHO05D000106 3.6e-09 67.0 35 85.7
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 4.8e-06 56.6 54 46.3
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 8.3e-06 55.8 54 42.6
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 8.3e-06 55.8 54 42.6


User provided reference genes

Program Settings