Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021590 Carpinus fangiana HOM05D000177 ORTHO05D043785 6.9e-102 374.0 193 100.0
Haze_21540 Corylus avellana HOM05D000177 ORTHO05D003047 7.7e-45 184.5 92 93.5
Cfa013167 Carpinus fangiana HOM05D000177 ORTHO05D003047 1.3e-44 183.7 93 92.5
CiPaw.08G012300 Carya illinoinensis HOM05D000177 ORTHO05D003047 1.2e-29 134.0 93 73.1
CiPaw.07G221700 Carya illinoinensis HOM05D000177 ORTHO05D003047 3.9e-28 129.0 75 82.7
Dinv15960 Davidia involucrata HOM05D000177 ORTHO05D003047 5.2e-25 118.6 101 62.4
Dinv18236 Davidia involucrata HOM05D000177 ORTHO05D003047 5.2e-25 118.6 101 62.4
QL02p022223 Quercus lobata HOM05D000177 ORTHO05D003047 5.2e-25 118.6 97 66.0
Dinv30159 Davidia involucrata HOM05D000177 ORTHO05D003047 4.9e-23 112.1 95 63.2
PGSC0003DMG400020780 Solanum tuberosum HOM05D000177 ORTHO05D003047 8.3e-23 111.3 96 59.4
Duzib168G1764 Durio zibethinus HOM05D000177 ORTHO05D003047 1.4e-22 110.5 93 57.0
CSS0000954 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D003047 1.9e-22 110.2 94 63.8
Duzib187G0260 Durio zibethinus HOM05D000177 ORTHO05D003047 1.9e-22 110.2 90 55.6
Solyc08g061090.3 Solanum lycopersicum HOM05D000177 ORTHO05D003047 7.0e-22 108.2 96 57.3
Sopen08g006380 Solanum pennellii HOM05D000177 ORTHO05D003047 7.0e-22 108.2 96 57.3
CSS0044940 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D003047 2.7e-21 106.3 93 62.4
CSS0050061 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D003047 2.7e-21 106.3 93 62.4
Duzib150G1586 Durio zibethinus HOM05D000177 ORTHO05D003047 1.0e-20 104.4 93 53.8
Gohir.D03G072600 Gossypium hirsutum HOM05D000177 ORTHO05D003047 1.7e-20 103.6 87 54.0
Gorai.013G105800 Gossypium raimondii HOM05D000177 ORTHO05D003047 1.7e-20 103.6 87 54.0
Hma1.2p1_0000F.1_g000260 Hydrangea macrophylla HOM05D000177 ORTHO05D003047 3.0e-20 102.8 94 61.7
Prupe.1G478800 Prunus persica HOM05D000177 ORTHO05D003047 3.0e-20 102.8 92 59.8
Cpa.g.sc115.6 Carica papaya HOM05D000177 ORTHO05D003047 3.9e-20 102.4 92 55.4
Thecc.09G150700 Theobroma cacao HOM05D000177 ORTHO05D003047 6.6e-20 101.7 90 52.2
Actinidia14611 Actinidia chinensis HOM05D000177 ORTHO05D003047 1.1e-19 100.9 97 56.7
TWI32G0943 Tripterygium wilfordii HOM05D000177 ORTHO05D003047 5.6e-19 98.6 94 56.4
TWI63G0614 Tripterygium wilfordii HOM05D000177 ORTHO05D003047 7.3e-19 98.2 94 53.2
Gohir.A02G114000 Gossypium hirsutum HOM05D000177 ORTHO05D003047 9.5e-19 97.8 87 52.9
TAR626G1843 Trochodendron aralioides HOM05D000177 ORTHO05D003047 9.5e-19 97.8 103 54.4
Nn8g39419 Nelumbo nucifera HOM05D000177 ORTHO05D003047 1.2e-18 97.4 103 56.3
vmacro05186 Vaccinium macrocarpon HOM05D000177 ORTHO05D003047 3.6e-18 95.9 92 58.7
CAN.G117.7 Capsicum annuum HOM05D000177 ORTHO05D003047 1.1e-17 94.4 93 52.7
Lj7A720T80 Lonicera japonica HOM05D000177 ORTHO05D003047 4.0e-17 92.4 112 48.2
TAR383G0080 Trochodendron aralioides HOM05D000177 ORTHO05D003047 4.0e-17 92.4 97 53.6
ClCG08G013240 Citrullus lanatus HOM05D000177 ORTHO05D003047 8.9e-17 91.3 88 56.8
CsaV3_3G046500 Cucumis sativus L. HOM05D000177 ORTHO05D003047 2.6e-16 89.7 109 46.8
Hund25756 Selenicereus undatus HOM05D000177 ORTHO05D003047 2.6e-16 89.7 94 51.1
EL10Ac2g02613 Beta vulgaris HOM05D000177 ORTHO05D003047 4.4e-16 89.0 97 48.5
AUR62030636 Chenopodium quinoa HOM05D000177 ORTHO05D003047 4.4e-16 89.0 93 54.8
MELO3C003690.2 Cucumis melo HOM05D000177 ORTHO05D003047 4.4e-16 89.0 94 52.1
AUR62024906 Chenopodium quinoa HOM05D000177 ORTHO05D003047 9.8e-16 87.8 93 53.8
ClCG05G017020 Citrullus lanatus HOM05D000177 ORTHO05D003047 9.8e-16 87.8 93 50.5
PGR031G0009 Punica granatum HOM05D000177 ORTHO05D003047 9.8e-16 87.8 98 52.0
Actinidia13245 Actinidia chinensis HOM05D000177 ORTHO05D003047 1.7e-15 87.0 91 54.9
Aqoxy7G03723 Aquilegia oxysepala HOM05D000177 ORTHO05D003047 2.9e-15 86.3 105 47.6
MELO3C011251.2 Cucumis melo HOM05D000177 ORTHO05D003047 2.9e-15 86.3 92 56.5
MD15G1123400 Malus domestica HOM05D000177 ORTHO05D003047 3.7e-15 85.9 96 52.1
CANSAT25G0237 Cannabis sativa HOM05D000177 ORTHO05D003047 4.9e-15 85.5 98 48.0
Gohir.A05G009000 Gossypium hirsutum HOM05D000177 ORTHO05D003047 4.9e-15 85.5 86 50.0
CsaV3_2G031970 Cucumis sativus L. HOM05D000177 ORTHO05D003047 6.4e-15 85.1 92 55.4
Actinidia15679 Actinidia chinensis HOM05D000177 ORTHO05D003047 8.3e-15 84.7 98 51.0
Manes.16G120600 Manihot esculenta HOM05D000177 ORTHO05D003047 1.9e-14 83.6 90 55.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.4e-14 83.2 99 49.5
Eucgr.C01768 Eucalyptus grandis HOM05D000177 ORTHO05D003047 2.4e-14 83.2 90 53.3
MD08G1147400 Malus domestica HOM05D000177 ORTHO05D003047 2.4e-14 83.2 96 52.1
arahy.Tifrunner.gnm1.ann1.HIL042 Arachis hypogaea HOM05D000177 ORTHO05D003047 5.4e-14 82.0 100 50.0
RcHm_v2.0_Chr6g0298201 Rosa chinensis HOM05D000177 ORTHO05D003047 9.2e-14 81.3 98 52.0
Ah.10g026760 Amaranthus hybridus HOM05D000177 ORTHO05D003047 1.2e-13 80.9 93 48.4
Lj1g0006558 Lotus japonicus HOM05D000177 ORTHO05D003047 1.2e-13 80.9 93 51.6
arahy.Tifrunner.gnm1.ann1.IX0T6E Arachis hypogaea HOM05D000177 ORTHO05D003047 1.6e-13 80.5 99 49.5
Gohir.D05G009700 Gossypium hirsutum HOM05D000177 ORTHO05D003047 2.1e-13 80.1 86 50.0
Gorai.009G010000 Gossypium raimondii HOM05D000177 ORTHO05D003047 2.1e-13 80.1 86 50.0
GSVIVG01035833001 Vitis vinifera HOM05D000177 ORTHO05D003047 2.1e-13 80.1 71 57.7
Sc09g0008340 Simmondsia chinensis HOM05D000177 ORTHO05D003047 2.7e-13 79.7 97 49.5
Sed0013261 Sechium edule HOM05D000177 ORTHO05D003047 4.6e-13 79.0 88 50.0
Migut.B01147 Erythranthe guttata HOM05D000177 ORTHO05D043785 6.0e-13 78.6 92 46.7
Hund03025 Selenicereus undatus HOM05D000177 ORTHO05D003047 6.0e-13 78.6 97 45.4
FvH4_2g29400 Fragaria vesca HOM05D000177 ORTHO05D003047 7.8e-13 78.2 98 48.0
FAN24G0019 Fragaria x ananassa HOM05D000177 ORTHO05D003047 7.8e-13 78.2 98 48.0
MBI04_g08003_MAGBIO Magnolia biondii HOM05D000177 ORTHO05D003047 1.7e-12 77.0 99 46.5
Peaxi162Scf00073g01115 Petunia axillaris HOM05D000177 ORTHO05D003047 3.0e-12 76.3 90 46.7
SalBow4G0228 Salvia bowleyana HOM05D000177 ORTHO05D003047 3.0e-12 76.3 85 47.1
vmacro20545 Vaccinium macrocarpon HOM05D000177 ORTHO05D003047 3.0e-12 76.3 100 45.0
Cc08_g00900 Coffea canephora HOM05D000177 ORTHO05D003047 3.9e-12 75.9 99 48.5
Nitab4.5_0002007g0040 Nicotiana tabacum HOM05D000177 ORTHO05D003047 3.9e-12 75.9 97 49.5
Dinv41519 Davidia involucrata HOM05D000177 ORTHO05D003047 6.6e-12 75.1 97 47.4
Nitab4.5_0009676g0010 Nicotiana tabacum HOM05D000177 ORTHO05D003047 8.6e-12 74.7 85 55.3
FAN27G2630 Fragaria x ananassa HOM05D000177 ORTHO05D003047 1.1e-11 74.3 100 49.0
MSTRG.11625 Avicennia marina HOM05D000177 ORTHO05D003047 1.5e-11 73.9 92 42.4
Migut.A00053 Erythranthe guttata HOM05D000177 ORTHO05D003047 1.5e-11 73.9 92 46.7
Eucgr.C02799 Eucalyptus grandis HOM05D000177 ORTHO05D003047 1.5e-11 73.9 93 46.2
FAN15G1861 Fragaria x ananassa HOM05D000177 ORTHO05D003047 1.5e-11 73.9 99 49.5
TPR.G28707 Trifolium pratense HOM05D000177 ORTHO05D003047 1.5e-11 73.9 98 49.0
FAN20G1811 Fragaria x ananassa HOM05D000177 ORTHO05D003047 1.9e-11 73.6 99 47.5
BcaC07g40862 Brassica carinata HOM05D000177 ORTHO05D003047 3.3e-11 72.8 96 46.9
Sed0020789 Sechium edule HOM05D000177 ORTHO05D003047 4.3e-11 72.4 91 48.4
Ciclev10008501m.g Citrus clementina HOM05D000177 ORTHO05D003047 5.6e-11 72.0 103 42.7
A09p55610 Brassica napus HOM05D000177 ORTHO05D003047 7.3e-11 71.6 99 45.5
BraA09t40963Z Brassica rapa HOM05D000177 ORTHO05D003047 7.3e-11 71.6 99 45.5
Actinidia40464 Actinidia chinensis HOM05D000177 ORTHO05D003047 1.6e-10 70.5 95 43.2
C08p38600 Brassica napus HOM05D000177 ORTHO05D003047 1.6e-10 70.5 96 45.8
BolC8t51432H Brassica oleracea HOM05D000177 ORTHO05D003047 1.6e-10 70.5 96 45.8
Atru.chr7.2394 Acer truncatum HOM05D000177 ORTHO05D003047 2.8e-10 69.7 85 43.5
Manes.03G016300 Manihot esculenta HOM05D000177 ORTHO05D003047 2.8e-10 69.7 93 47.3
MSTRG.1718 Avicennia marina HOM05D000177 ORTHO05D003047 3.6e-10 69.3 91 41.8
Ah.12g064100 Amaranthus hybridus HOM05D000177 ORTHO05D003047 4.7e-10 68.9 88 43.2
Glyma.06G069500 Glycine max HOM05D000177 ORTHO05D003047 4.7e-10 68.9 93 49.5
Rhsim01G0074200 Rhododendron simsii HOM05D000177 ORTHO05D003047 6.2e-10 68.6 73 46.6
Hma1.2p1_0018F.1_g012540 Hydrangea macrophylla HOM05D000177 ORTHO05D003047 1.1e-09 67.8 102 44.1
Oeu047073.1 Olea europaea HOM05D000177 ORTHO05D003047 1.1e-09 67.8 89 47.2
Ca_15718_v3 Cicer arietinum L. HOM05D000177 ORTHO05D003047 1.4e-09 67.4 96 46.9
Potri.006G252100 Populus trichocarpa HOM05D000177 ORTHO05D003047 1.4e-09 67.4 94 48.9
Glyma.04G067800 Glycine max HOM05D000177 ORTHO05D003047 1.8e-09 67.0 91 47.3
Lj5g0009352 Lotus japonicus HOM05D000177 ORTHO05D003047 2.3e-09 66.6 81 43.2
Migut.E01792 Erythranthe guttata HOM05D000177 ORTHO05D003047 3.1e-09 66.2 99 39.4
SGA_v2.0_scaffold64G21911 Striga asiatica HOM05D000177 ORTHO05D003047 3.1e-09 66.2 89 46.1
CANSAT64G1553 Cannabis sativa HOM05D000177 ORTHO05D003047 4.0e-09 65.9 90 45.6
Thhalv10000186m.g Eutrema salsugineum HOM05D000177 ORTHO05D003047 4.0e-09 65.9 101 40.6
HanXRQChr09g0242311 Helianthus annuus HOM05D000177 ORTHO05D003047 6.8e-09 65.1 100 39.0
Psat6g029640 Pisum sativum HOM05D000177 ORTHO05D003047 8.9e-09 64.7 108 37.0
THA.LOC104803834 Tarenaya hassleriana HOM05D000177 ORTHO05D003047 1.2e-08 64.3 77 42.9
Psat5g028600 Pisum sativum HOM05D000177 ORTHO05D003047 1.5e-08 63.9 100 46.0
Sp4g04830 Schrenkiella parvula HOM05D000177 ORTHO05D003047 1.5e-08 63.9 99 40.4
Haze_25600 Corylus avellana HOM05D000177 ORTHO05D003047 2.0e-08 63.5 102 39.2
Sabra06G0197100 Salix brachista HOM05D000177 ORTHO05D003047 2.0e-08 63.5 94 46.8
PSO170G6713 Papaver somniferum HOM05D000177 ORTHO05D003047 3.4e-08 62.8 120 40.8
SalBow1G2036 Salvia bowleyana HOM05D000177 ORTHO05D003047 3.4e-08 62.8 90 44.4
PSO455G0066 Papaver somniferum HOM05D000177 ORTHO05D003047 4.4e-08 62.4 121 40.5
Actinidia21996 Actinidia chinensis HOM05D000177 ORTHO05D003047 5.8e-08 62.0 103 37.9
CARHR240320 Cardamine hirsuta HOM05D000177 ORTHO05D003047 7.6e-08 61.6 94 41.5
Lalb_Chr23g0268711 Lupinus albus HOM05D000177 ORTHO05D003047 7.6e-08 61.6 94 42.6
SGA_v2.0_scaffold20G09142 Striga asiatica HOM05D000177 ORTHO05D003047 7.6e-08 61.6 89 42.7
Cfa003359 Carpinus fangiana HOM05D000177 ORTHO05D003047 9.9e-08 61.2 99 38.4
Phvul.009G094100 Phaseolus vulgaris HOM05D000177 ORTHO05D003047 1.3e-07 60.8 90 44.4
THA.LOC104803668 Tarenaya hassleriana HOM05D000177 ORTHO05D003047 2.2e-07 60.1 102 38.2
Lsat_1_v5_gn_7_45600 Lactuca sativa HOM05D000177 ORTHO05D003047 2.9e-07 59.7 101 41.6
Oeu036563.1 Olea europaea HOM05D000177 ORTHO05D003047 3.7e-07 59.3 89 42.7
AL4G16970 Arabidopsis lyrata HOM05D000177 ORTHO05D003047 4.9e-07 58.9 74 43.2
Carub.0004s0524 Capsella rubella HOM05D000177 ORTHO05D003047 4.9e-07 58.9 71 42.3
Sed0019670 Sechium edule HOM05D000177 ORTHO05D003047 4.9e-07 58.9 96 40.6
Ca_12934_v3 Cicer arietinum L. HOM05D000177 ORTHO05D003047 8.4e-07 58.2 105 35.2
VMungo1309G0737 Vigna mungo HOM05D000177 ORTHO05D003047 8.4e-07 58.2 92 42.4
CDE06G1601 Ceratophyllum demersum HOM05D000177 ORTHO05D003047 1.1e-06 57.8 71 50.7
CDE01G0527 Ceratophyllum demersum HOM05D000177 ORTHO05D003047 1.9e-06 57.0 89 37.1
Lj4g0019802 Lotus japonicus HOM05D000177 ORTHO05D003047 2.4e-06 56.6 100 34.0
SalBow5G3391 Salvia bowleyana HOM05D000177 ORTHO05D003047 2.4e-06 56.6 69 42.0
AL7G19440 Arabidopsis lyrata HOM05D000177 ORTHO05D003047 3.2e-06 56.2 69 46.4
CDE07G0986 Ceratophyllum demersum HOM05D000177 ORTHO05D003047 3.2e-06 56.2 65 49.2
Aa31LG2G17530 Aethionema arabicum HOM05D000177 ORTHO05D003047 7.1e-06 55.1 78 39.7
VMungo0647G0347 Vigna mungo HOM05D000177 ORTHO05D003047 7.1e-06 55.1 97 37.1
AT4G32400 Arabidopsis thaliana HOM05D000177 ORTHO05D003047 9.2e-06 54.7 69 43.5
DCAR_000474 Daucus carota HOM05D000177 ORTHO05D003047 9.2e-06 54.7 98 36.7
DCAR_001520 Daucus carota HOM05D000177 ORTHO05D003047 9.2e-06 54.7 98 36.7
Lalb_Chr08g0244011 Lupinus albus HOM05D000177 ORTHO05D003047 9.2e-06 54.7 88 43.2


User provided reference genes

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