Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021541 Carpinus fangiana HOM05D002564 ORTHO05D024858 3.1e-23 110.9 55 100.0
Cfa005203 Carpinus fangiana HOM05D000493 ORTHO05D024858 3.2e-12 74.3 53 71.7
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 3.2e-12 74.3 39 92.3
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 3.2e-12 74.3 39 92.3
Cfa021349 Carpinus fangiana HOM05D002564 ORTHO05D024858 3.0e-10 67.8 37 89.2
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 3.9e-10 67.4 39 84.6
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 5.1e-10 67.0 39 82.1
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.1e-10 67.0 39 82.1
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.1e-10 67.0 39 82.1
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 8.7e-10 66.2 39 79.5
Potri.001G151800 Populus trichocarpa HOM05D002564 ORTHO05D003945 8.7e-10 66.2 39 82.1
Sabra01G0121500 Salix brachista HOM05D002564 ORTHO05D003945 8.7e-10 66.2 39 82.1
Sabra03G0053400 Salix brachista HOM05D002564 ORTHO05D003945 1.5e-09 65.5 39 79.5
Actinidia10860 Actinidia chinensis HOM05D002564 ORTHO05D003945 1.9e-09 65.1 39 79.5
Actinidia25904 Actinidia chinensis HOM05D002564 ORTHO05D003945 2.5e-09 64.7 39 79.5
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 2.5e-09 64.7 39 82.1
Manes.01G087400 Manihot esculenta HOM05D002564 ORTHO05D003945 2.5e-09 64.7 39 76.9
Manes.02G044200 Manihot esculenta HOM05D002564 ORTHO05D003945 2.5e-09 64.7 39 76.9
Nitab4.5_0007628g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.5e-09 64.7 39 76.9
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 2.5e-09 64.7 42 71.4
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 2.5e-09 64.7 50 64.0
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 3.3e-09 64.3 39 76.9
DCAR_008335 Daucus carota HOM05D002564 ORTHO05D024858 5.7e-09 63.5 39 79.5
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 7.4e-09 63.2 39 74.4
Actinidia02187 Actinidia chinensis HOM05D002564 ORTHO05D003945 9.7e-09 62.8 39 76.9
ClCG09G012780 Citrullus lanatus HOM05D002564 ORTHO05D003945 9.7e-09 62.8 39 76.9
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 9.7e-09 62.8 39 76.9
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 9.7e-09 62.8 39 74.4
Sed0004432 Sechium edule HOM05D002564 ORTHO05D003945 9.7e-09 62.8 39 76.9
MELO3C003332.2 Cucumis melo HOM05D002564 ORTHO05D003945 1.3e-08 62.4 39 76.9
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 1.3e-08 62.4 39 74.4
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 1.3e-08 62.4 39 74.4
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 1.6e-08 62.0 39 76.9
SalBow1G3000 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.2e-08 61.6 39 74.4
FvH4_5g20220 Fragaria vesca HOM05D002564 ORTHO05D003945 2.8e-08 61.2 38 76.3
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 2.8e-08 61.2 38 76.3
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 2.8e-08 61.2 38 76.3
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 2.8e-08 61.2 38 76.3
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 2.8e-08 61.2 43 65.1
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 2.8e-08 61.2 40 77.5
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 2.8e-08 61.2 38 76.3
Sed0002752 Sechium edule HOM05D002564 ORTHO05D003945 2.8e-08 61.2 39 74.4
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 6.3e-08 60.1 39 79.5
Nn6g33792 Nelumbo nucifera HOM05D002564 ORTHO05D003945 8.2e-08 59.7 39 74.4
HanXRQChr03g0089811 Helianthus annuus HOM05D002564 ORTHO05D003945 1.1e-07 59.3 39 69.2
CsaV3_3G049840 Cucumis sativus L. HOM05D002564 ORTHO05D003945 1.4e-07 58.9 39 71.8
Hma1.2p1_1008F.1_g247170 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.4e-07 58.9 39 71.8
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 1.8e-07 58.5 39 71.8
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 1.8e-07 58.5 38 71.1
BolC2t10881H Brassica oleracea HOM05D002564 ORTHO05D003945 2.4e-07 58.2 41 73.2
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 2.4e-07 58.2 39 66.7
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 2.4e-07 58.2 45 68.9
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 3.1e-07 57.8 40 72.5
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 4.1e-07 57.4 39 69.2
HanXRQChr13g0418211 Helianthus annuus HOM05D002564 ORTHO05D003945 5.3e-07 57.0 41 70.7
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 5.3e-07 57.0 43 67.4
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 5.3e-07 57.0 39 66.7
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 6.9e-07 56.6 39 76.9
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 6.9e-07 56.6 38 71.1
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 6.9e-07 56.6 38 71.1
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 66.7
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 69.2
Gohir.A11G028900 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 71.8
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 1.2e-06 55.8 38 68.4
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 1.2e-06 55.8 38 68.4
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 64.1
PGR042G0532 Punica granatum HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 71.8
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 69.2
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-06 55.8 39 66.7
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 1.5e-06 55.5 39 74.4
Hma1.2p1_3142F.1_g333090 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.5e-06 55.5 39 76.9
Aa31sc58G60 Aethionema arabicum HOM05D002564 ORTHO05D003945 2.0e-06 55.1 39 74.4
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 2.0e-06 55.1 39 74.4
AT5G47120 Arabidopsis thaliana HOM05D002564 ORTHO05D003945 2.0e-06 55.1 39 74.4
Duzib084G1389 Durio zibethinus HOM05D002564 ORTHO05D003945 2.0e-06 55.1 39 71.8
Glyma.11G037700 Glycine max HOM05D002564 ORTHO05D003945 2.6e-06 54.7 42 64.3
Gohir.D11G027400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 2.6e-06 54.7 39 71.8
Gorai.007G029900 Gossypium raimondii HOM05D002564 ORTHO05D003945 2.6e-06 54.7 39 71.8
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.6e-06 54.7 40 70.0
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
BcaB07g30791 Brassica carinata HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
C09p29450 Brassica napus HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 3.4e-06 54.3 39 71.8
arahy.Tifrunner.gnm1.ann1.QND09G Arachis hypogaea HOM05D002564 ORTHO05D003945 4.5e-06 53.9 42 64.3
Carub.0007s2380 Capsella rubella HOM05D002564 ORTHO05D003945 4.5e-06 53.9 39 71.8
Carub.0008s0063 Capsella rubella HOM05D002564 ORTHO05D003945 4.5e-06 53.9 39 71.8
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 4.5e-06 53.9 39 71.8
ECA240G1580 Erigeron canadensis HOM05D002564 ORTHO05D003945 4.5e-06 53.9 41 73.2
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 4.5e-06 53.9 39 64.1
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 5.9e-06 53.5 39 64.1
THA.LOC104806682 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 5.9e-06 53.5 39 69.2
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 7.7e-06 53.1 39 69.2
Duzib205G0006 Durio zibethinus HOM05D002564 ORTHO05D003945 7.7e-06 53.1 39 69.2
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 7.7e-06 53.1 39 64.1
A09p22870 Brassica napus HOM05D002564 ORTHO05D003945 1.0e-05 52.8 39 69.2
BraA09t37889Z Brassica rapa HOM05D002564 ORTHO05D003945 1.0e-05 52.8 39 69.2
Hma1.2p1_0840F.1_g226550 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.0e-05 52.8 37 73.0
Lsat_1_v5_gn_6_94980 Lactuca sativa HOM05D002564 ORTHO05D003945 1.0e-05 52.8 41 65.9
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 1.0e-05 52.8 39 61.5


User provided reference genes

Program Settings