Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 7.2e-62 241.1 200 100.0
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 8.2e-58 227.6 202 97.0
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 5.3e-57 224.9 202 96.5
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.6e-53 212.2 200 75.5
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.0e-52 209.1 200 82.5
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 5.2e-52 208.4 200 85.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 2.0e-51 206.5 111 91.0
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.0e-51 206.5 111 91.0
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 4.4e-51 205.3 200 90.0
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 4.4e-51 205.3 200 89.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.7e-50 202.2 200 83.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 4.8e-50 201.8 200 85.5
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.4e-49 200.3 111 89.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 2.4e-49 199.5 200 88.5
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 7.0e-49 198.0 111 89.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 9.1e-49 197.6 211 76.8
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 2.7e-48 196.1 202 84.7
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 3.5e-48 195.7 200 84.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.5e-48 195.7 111 87.4
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 4.5e-48 195.3 111 86.5
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 5.9e-48 194.9 111 85.6
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.9e-48 194.9 111 85.6
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.7e-48 194.5 200 81.5
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.0e-47 194.1 201 80.1
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.0e-47 194.1 111 86.5
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.0e-47 194.1 111 85.6
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.0e-47 194.1 111 85.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.3e-47 193.7 111 87.4
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-47 193.7 201 87.6
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.3e-47 193.7 200 71.5
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.7e-47 193.4 111 87.4
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.7e-47 193.4 111 87.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 2.3e-47 193.0 112 85.7
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.9e-47 192.6 200 81.0
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.8e-47 192.2 111 83.8
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 5.0e-47 191.8 111 85.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 5.0e-47 191.8 200 81.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 5.0e-47 191.8 200 84.5
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 6.5e-47 191.4 111 86.5
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 8.6e-47 191.0 111 84.7
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.6e-47 191.0 108 88.0
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.1e-46 190.7 111 84.7
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 4.2e-46 188.7 202 78.7
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.2e-46 188.7 109 86.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 4.2e-46 188.7 107 88.8
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.2e-46 188.7 111 85.6
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 5.5e-46 188.3 111 82.0
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 7.2e-46 188.0 108 87.0
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 9.5e-46 187.6 111 82.0
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.2e-45 187.2 107 86.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.6e-45 186.8 118 83.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 2.1e-45 186.4 202 86.1
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.1e-45 186.4 110 83.6
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.1e-45 186.4 135 71.9
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 3.6e-45 185.7 111 82.0
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 3.6e-45 185.7 107 86.9
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.6e-45 185.7 108 85.2
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.6e-45 185.7 110 85.5
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 4.7e-45 185.3 111 82.9
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 4.7e-45 185.3 104 87.5
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 4.7e-45 185.3 106 87.7
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 6.1e-45 184.9 200 83.5
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 1.0e-44 184.1 111 82.9
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 107 86.0
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.8e-44 183.3 110 83.6
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 2.3e-44 183.0 112 82.1
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.0e-44 182.6 200 83.5
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 4.0e-44 182.2 111 81.1
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.2e-44 181.8 111 81.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 5.2e-44 181.8 111 81.1
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 6.8e-44 181.4 104 85.6
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 8.9e-44 181.0 102 88.2
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 1.5e-43 180.3 104 85.6
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.0e-43 179.9 105 83.8
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.0e-43 179.9 105 83.8
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-43 179.5 111 81.1
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 3.4e-43 179.1 105 83.8
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 4.4e-43 178.7 107 86.0
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.4e-43 178.7 102 87.3
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 9.8e-43 177.6 106 84.0
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 102 86.3
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 102 86.3
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.7e-42 176.8 110 81.8
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 106 83.0
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 3.7e-42 175.6 110 80.9
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.9e-42 175.3 102 85.3
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 8.3e-42 174.5 106 81.1
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.1e-41 174.1 106 82.1
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-41 174.1 107 81.3
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.1e-41 174.1 110 80.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.8e-41 173.3 110 80.0
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.8e-41 173.3 101 82.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.8e-41 173.3 101 82.2
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.4e-41 172.9 106 80.2
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 3.1e-41 172.6 110 79.1
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 3.1e-41 172.6 110 79.1
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-41 172.2 110 79.1
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 4.1e-41 172.2 107 80.4
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 5.4e-41 171.8 102 81.4
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 7.0e-41 171.4 135 70.4
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.2e-40 170.6 106 80.2
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.6e-40 170.2 106 79.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 3.5e-40 169.1 102 79.4
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 3.5e-40 169.1 105 81.9
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 5.9e-40 168.3 108 78.7
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 5.9e-40 168.3 108 78.7
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 5.9e-40 168.3 108 78.7
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 5.9e-40 168.3 108 78.7
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 5.9e-40 168.3 101 80.2
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.8e-40 167.9 105 79.0
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.3e-39 167.2 104 77.9
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 8.6e-39 164.5 106 78.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 8.6e-39 164.5 106 78.3
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.6e-38 161.8 112 73.2
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 9.5e-38 161.0 112 73.2
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.4e-36 157.1 113 69.9
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-35 154.1 188 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.5e-35 153.7 112 67.9
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 9.8e-35 151.0 165 53.9
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 9.2e-33 144.4 105 69.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.7e-32 142.9 82 86.6
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.3e-31 140.6 190 46.8
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.3e-31 139.8 111 64.9
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 3.9e-31 139.0 81 85.2
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.5e-30 137.1 80 83.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.3e-30 136.0 124 62.1
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 7.3e-30 134.8 80 83.8
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.1e-28 129.4 71 85.9
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-27 127.5 224 39.7
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 6.4e-26 121.7 65 93.8
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 6.4e-26 121.7 65 93.8
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 7.0e-25 118.2 77 75.3
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.2e-24 117.5 77 74.0
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 5.0e-23 112.1 81 66.7
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.9e-22 110.2 69 79.7
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 8.9e-20 101.3 82 67.1
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-19 100.9 81 66.7
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.2e-19 100.9 139 50.4
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 5.8e-19 98.6 111 55.0
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.3e-18 97.4 75 70.7
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 3.7e-18 95.9 72 63.9
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 4.1e-17 92.4 102 51.0
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-15 87.4 62 71.0
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.7e-15 87.0 115 47.8
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.1e-14 84.3 140 87.1
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-14 82.4 77 58.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 4.3e-14 82.4 77 58.4
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 4.3e-14 82.4 77 58.4
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 5.6e-14 82.0 93 52.7
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 9.5e-14 81.3 137 84.7
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 8.1e-13 78.2 48 83.3
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 1.5e-11 73.9 34 97.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.4e-09 66.6 48 72.9
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-07 60.5 45 71.1
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.5e-06 57.4 40 75.0
A09p52080 Brassica napus HOM05D004131 ORTHO05D004778 7.3e-06 55.1 31 83.9


User provided reference genes

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