Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.4e-109 398.3 195 100.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 5.1e-36 155.2 179 48.6
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 5.1e-36 155.2 178 47.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 5.6e-35 151.8 179 48.0
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.3e-35 151.4 183 46.4
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.6e-34 150.2 183 45.9
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.6e-34 150.2 178 46.1
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.1e-34 149.8 178 46.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.7e-34 148.7 178 44.9
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.7e-34 148.7 178 44.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.7e-34 148.7 182 45.6
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.2e-34 148.3 182 45.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.2e-34 148.3 182 45.6
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 8.1e-34 147.9 179 47.5
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 8.1e-34 147.9 179 46.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 8.1e-34 147.9 179 46.4
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.1e-34 147.9 182 45.6
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 8.1e-34 147.9 189 43.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-33 147.5 178 46.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.1e-33 147.5 182 44.0
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.4e-33 147.1 179 45.3
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.4e-33 146.4 179 45.8
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 3.1e-33 146.0 182 46.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 4.0e-33 145.6 186 45.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.2e-33 145.2 184 44.6
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 5.2e-33 145.2 182 44.0
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 5.2e-33 145.2 184 45.1
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 6.9e-33 144.8 178 44.4
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 6.9e-33 144.8 179 45.3
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 6.9e-33 144.8 179 45.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 6.9e-33 144.8 179 46.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 6.9e-33 144.8 191 43.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 6.9e-33 144.8 185 43.2
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 9.0e-33 144.4 182 44.5
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 9.0e-33 144.4 193 42.5
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 9.0e-33 144.4 191 43.5
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.2e-32 144.1 180 45.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.5e-32 143.7 183 42.6
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.0e-32 143.3 190 42.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.0e-32 143.3 186 44.1
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.6e-32 142.9 186 44.1
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.6e-32 142.9 182 43.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-32 142.9 184 44.0
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.4e-32 142.5 186 43.5
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.4e-32 142.5 183 44.3
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 4.4e-32 142.1 183 42.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 4.4e-32 142.1 191 42.9
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.4e-32 142.1 187 43.3
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 5.8e-32 141.7 183 43.7
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 7.6e-32 141.4 181 42.0
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.6e-32 141.4 183 43.7
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 7.6e-32 141.4 186 44.6
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 9.9e-32 141.0 178 43.8
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.9e-32 141.0 182 44.0
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.9e-32 141.0 182 44.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 9.9e-32 141.0 178 44.9
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 9.9e-32 141.0 187 42.8
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-31 140.6 190 41.1
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.3e-31 140.6 178 43.3
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.3e-31 140.6 182 42.9
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.3e-31 140.6 182 42.9
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.3e-31 140.6 179 44.1
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-31 140.6 179 44.1
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.3e-31 140.6 182 43.4
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.3e-31 140.6 182 43.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.3e-31 140.6 183 43.2
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.3e-31 140.6 183 44.3
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.7e-31 140.2 178 43.3
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.7e-31 140.2 183 43.2
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.7e-31 140.2 183 43.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.7e-31 140.2 182 44.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.7e-31 140.2 183 45.4
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.2e-31 139.8 183 43.7
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 2.2e-31 139.8 190 40.5
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.2e-31 139.8 183 44.8
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.9e-31 139.4 179 44.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.9e-31 139.4 178 46.1
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.9e-31 139.4 182 43.4
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.9e-31 139.4 183 43.2
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.9e-31 139.4 190 41.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.8e-31 139.0 180 45.0
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.8e-31 139.0 183 43.7
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 3.8e-31 139.0 186 41.4
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 8.4e-31 137.9 180 45.6
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 8.4e-31 137.9 178 42.1
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.4e-30 137.1 183 42.1
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.9e-30 136.7 178 44.4
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-30 136.7 178 43.3
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-30 136.7 178 43.3
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.9e-30 136.7 181 42.0
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.2e-30 135.6 187 42.2
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 5.4e-30 135.2 188 42.0
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 5.4e-30 135.2 188 42.0
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 5.4e-30 135.2 185 41.6
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 5.4e-30 135.2 201 41.8
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 7.1e-30 134.8 180 43.3
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.1e-30 134.8 194 41.8
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.2e-29 134.0 180 43.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.2e-29 134.0 183 44.3
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.1e-29 133.3 183 41.0
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.6e-29 132.1 204 40.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.1e-27 127.5 196 41.8
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.5e-27 126.3 181 41.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 2.5e-27 126.3 182 39.6
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 9.6e-27 124.4 183 40.4
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.3e-26 124.0 214 36.9
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 6.2e-26 121.7 157 44.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.0e-25 119.0 122 49.2
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 4.0e-25 119.0 167 42.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 5.3e-25 118.6 152 42.8
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 9.0e-25 117.9 183 39.9
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.6e-24 116.3 196 38.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.7e-23 113.6 144 43.8
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.9e-23 112.8 121 47.1
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.1e-22 110.9 113 47.8
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.1e-21 106.7 122 45.9
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.7e-21 106.3 189 38.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 4.6e-21 105.5 121 47.9
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 4.6e-21 105.5 142 41.5
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 7.9e-21 104.8 141 41.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.3e-20 104.0 191 36.1
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.1e-19 100.9 179 37.4
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.3e-19 99.4 174 37.9
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.8e-18 95.5 97 52.6
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.4e-17 93.2 92 51.1
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-16 90.5 83 53.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-16 90.5 83 53.0
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.8e-16 88.6 93 48.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.9e-15 85.5 165 35.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.9e-14 83.6 80 53.8
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.1e-13 80.1 118 39.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.5e-11 73.2 183 30.1
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.1e-09 67.8 118 33.1
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.0e-08 63.5 122 33.6
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 3.4e-08 62.8 64 45.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.0e-07 61.2 130 30.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.0e-07 61.2 130 30.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.8e-07 59.3 90 41.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-06 57.4 73 42.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.5e-06 56.6 96 34.4
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.2e-06 56.2 114 33.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 7.1e-06 55.1 114 32.5


User provided reference genes

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