Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 1.8e-89 332.8 200 100.0
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 4.4e-67 258.5 206 71.8
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 2.4e-65 252.7 202 68.8
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 1.5e-62 243.4 202 69.8
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 2.1e-61 239.6 203 64.5
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 1.0e-60 237.3 159 93.7
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 9.1e-57 224.2 205 64.4
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 3.5e-56 222.2 200 68.0
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 7.7e-56 221.1 200 70.0
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 6.5e-55 218.0 204 62.3
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 4.2e-54 215.3 202 62.9
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 9.4e-54 214.2 206 61.2
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.6e-53 213.4 209 67.9
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 5.2e-52 208.4 205 66.3
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 2.6e-51 206.1 204 58.8
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 3.4e-51 205.7 202 65.8
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 3.4e-51 205.7 212 63.2
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 7.5e-51 204.5 200 68.0
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 1.3e-50 203.8 204 67.2
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 1.3e-50 203.8 201 63.7
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 1.7e-50 203.4 210 58.6
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.7e-50 203.4 210 58.6
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.2e-50 203.0 207 65.2
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 2.8e-50 202.6 200 67.5
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.8e-50 202.6 200 67.5
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 2.8e-50 202.6 200 65.5
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 1.8e-49 199.9 201 64.7
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 1.8e-49 199.9 208 65.4
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.2e-48 197.2 201 64.7
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.6e-48 196.8 201 65.7
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 2.0e-48 196.4 203 63.5
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 3.5e-48 195.7 205 63.9
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 4.5e-48 195.3 211 63.0
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 4.5e-48 195.3 203 63.1
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 5.9e-48 194.9 205 63.9
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 5.9e-48 194.9 201 64.2
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 1.3e-47 193.7 211 64.9
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 1.7e-47 193.4 201 63.2
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 5.0e-47 191.8 213 63.4
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 6.5e-47 191.4 201 64.2
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 8.6e-47 191.0 204 64.2
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.1e-46 190.7 204 64.2
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.1e-46 190.7 209 61.2
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.9e-46 189.9 204 66.7
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 2.5e-46 189.5 206 59.7
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 4.2e-46 188.7 203 62.1
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.2e-45 187.2 204 65.7
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 2.1e-45 186.4 201 63.7
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 6.1e-45 184.9 200 64.5
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.0e-44 184.1 200 64.5
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 2.3e-44 183.0 207 61.4
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 8.9e-44 181.0 212 61.8
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.5e-43 180.3 202 52.5
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 2.0e-43 179.9 214 62.6
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 2.2e-42 176.4 214 59.8
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.7e-42 175.6 205 61.0
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 6.3e-42 174.9 192 53.6
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.8e-41 173.3 214 57.9
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 4.1e-41 172.2 212 60.8
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.6e-40 170.2 220 54.5
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 3.5e-40 169.1 205 51.7
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.3e-39 167.2 216 59.3
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.7e-39 166.8 213 49.8
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 1.7e-39 166.8 219 52.5
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 1.5e-38 163.7 218 50.5
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 1.5e-38 163.7 218 50.5
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 1.5e-38 163.7 218 50.5
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.5e-38 162.9 204 52.5
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 1.0e-36 157.5 215 46.0
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 2.3e-36 156.4 215 47.4
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 4.0e-36 155.6 197 56.3
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.5e-35 153.7 156 63.5
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.5e-35 153.7 211 55.5
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 2.0e-35 153.3 160 66.2
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 2.0e-35 153.3 203 49.8
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 2.9e-34 149.4 218 52.3
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 3.7e-34 149.1 219 50.2
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 6.4e-34 148.3 218 51.8
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 1.8e-33 146.7 219 51.6
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 7.0e-33 144.8 218 55.0
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 2.7e-32 142.9 203 51.2
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 1.0e-31 141.0 218 54.1
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 1.3e-31 140.6 219 53.9
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 8.6e-31 137.9 221 53.8
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.1e-30 137.5 158 50.0
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.5e-30 137.1 162 51.9
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.9e-30 136.7 174 59.2
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 5.6e-30 135.2 207 55.6
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 1.2e-29 134.0 217 54.4
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 1.4e-28 130.6 157 58.0
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 4.0e-28 129.0 150 50.7
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 1.7e-26 123.6 157 59.2
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 2.2e-26 123.2 205 52.7
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 6.4e-26 121.7 158 56.3
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 2.0e-24 116.7 160 60.6
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 2.7e-24 116.3 185 50.3
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.3e-23 114.0 218 49.1
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 3.0e-23 112.8 170 51.8
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 5.0e-23 112.1 206 47.1
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 1.8e-20 103.6 180 51.7
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 1.5e-19 100.5 190 47.9
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 1.7e-18 97.1 187 43.3
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 2.4e-17 93.2 156 39.7
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 1.0e-15 87.8 184 48.4
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.0e-15 87.8 123 47.2
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 6.6e-15 85.1 166 53.6
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 9.5e-14 81.3 84 58.3
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 1.6e-13 80.5 147 42.9
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 4.7e-13 79.0 93 54.8
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 4.7e-13 79.0 156 44.2
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 6.2e-13 78.6 80 61.2
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 8.1e-13 78.2 196 43.9
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.8e-12 77.0 202 46.0
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 1.2e-11 74.3 167 38.9
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 1.3e-10 70.9 203 36.0
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 8.4e-10 68.2 49 79.6
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.1e-09 67.8 176 35.2
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.9e-09 67.0 157 36.9
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 4.1e-09 65.9 173 32.4
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.6e-08 63.9 175 35.4
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.6e-08 63.9 176 35.2
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 2.7e-08 63.2 119 43.7
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.6e-08 62.4 183 31.7
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.6e-08 62.4 154 34.4
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.6e-08 62.4 153 35.9
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 6.0e-08 62.0 112 42.0
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 7.8e-08 61.6 188 33.0
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.8e-08 61.6 109 41.3
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 7.8e-08 61.6 161 34.8
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.3e-07 60.8 195 31.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.7e-07 60.5 167 33.5
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.7e-07 60.5 191 31.9
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.3e-07 60.1 160 33.8
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.3e-07 60.1 163 36.2
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 2.3e-07 60.1 165 33.3
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 2.3e-07 60.1 152 36.8
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.3e-07 60.1 158 33.5
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 3.0e-07 59.7 158 34.2
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.0e-07 59.7 191 30.9
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.0e-07 59.7 169 34.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 3.0e-07 59.7 180 33.3
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.9e-07 59.3 160 35.6
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 3.9e-07 59.3 121 41.3
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.1e-07 58.9 160 33.8
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 5.1e-07 58.9 165 32.1
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 6.6e-07 58.5 159 35.8
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.6e-07 58.5 163 36.2
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 6.6e-07 58.5 85 38.8
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 8.7e-07 58.2 195 28.2
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 8.7e-07 58.2 130 39.2
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.1e-06 57.8 111 37.8
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.1e-06 57.8 35 85.7
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.1e-06 57.8 109 38.5
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 117 41.0
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.5e-06 57.4 109 39.4
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.5e-06 57.4 164 33.5
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.5e-06 57.4 117 37.6
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.5e-06 57.4 117 37.6
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-06 57.0 191 28.8
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.9e-06 57.0 113 36.3
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.5e-06 56.6 35 80.0
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.5e-06 56.6 188 31.4
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.5e-06 56.6 35 82.9
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.5e-06 56.6 186 31.7
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 3.3e-06 56.2 110 41.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 3.3e-06 56.2 158 34.8
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 4.3e-06 55.8 111 43.2
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 4.3e-06 55.8 113 41.6
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.3e-06 55.8 113 36.3
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 4.3e-06 55.8 155 31.0
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 4.3e-06 55.8 109 40.4
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 5.6e-06 55.5 117 38.5
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 5.6e-06 55.5 105 40.0
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.6e-06 55.5 109 39.4
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.6e-06 55.5 109 41.3
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.3e-06 55.1 176 32.4
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 7.3e-06 55.1 109 38.5
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 9.6e-06 54.7 117 37.6
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 9.6e-06 54.7 119 37.0
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 9.6e-06 54.7 123 35.8


User provided reference genes

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