Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021349 Carpinus fangiana HOM05D002564 ORTHO05D024858 3.5e-32 141.0 69 100.0
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 4.5e-11 70.9 37 91.9
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 4.5e-11 70.9 37 91.9
Cfa005203 Carpinus fangiana HOM05D000493 ORTHO05D024858 1.3e-10 69.3 40 85.0
Cfa021541 Carpinus fangiana HOM05D002564 ORTHO05D024858 1.7e-10 68.9 37 89.2
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 5.4e-09 63.9 37 83.8
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.4e-09 63.9 37 83.8
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.4e-09 63.9 37 83.8
Actinidia25904 Actinidia chinensis HOM05D002564 ORTHO05D003945 7.1e-09 63.5 37 81.1
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 7.1e-09 63.5 37 81.1
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 1.6e-08 62.4 37 78.4
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 1.6e-08 62.4 37 81.1
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 2.1e-08 62.0 37 78.4
Sabra03G0053400 Salix brachista HOM05D002564 ORTHO05D003945 2.1e-08 62.0 37 78.4
Potri.001G151800 Populus trichocarpa HOM05D002564 ORTHO05D003945 2.7e-08 61.6 37 78.4
Sabra01G0121500 Salix brachista HOM05D002564 ORTHO05D003945 2.7e-08 61.6 37 78.4
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 3.5e-08 61.2 37 75.7
ClCG09G012780 Citrullus lanatus HOM05D002564 ORTHO05D003945 3.5e-08 61.2 37 78.4
Manes.01G087400 Manihot esculenta HOM05D002564 ORTHO05D003945 3.5e-08 61.2 37 75.7
Manes.02G044200 Manihot esculenta HOM05D002564 ORTHO05D003945 3.5e-08 61.2 37 75.7
Sed0004432 Sechium edule HOM05D002564 ORTHO05D003945 3.5e-08 61.2 37 78.4
MELO3C003332.2 Cucumis melo HOM05D002564 ORTHO05D003945 4.6e-08 60.8 37 78.4
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 7.9e-08 60.1 37 75.7
SalBow1G3000 Salvia bowleyana HOM05D002564 ORTHO05D003945 7.9e-08 60.1 37 78.4
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.0e-07 59.7 37 75.7
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 1.0e-07 59.7 37 73.0
Sed0002752 Sechium edule HOM05D002564 ORTHO05D003945 1.0e-07 59.7 37 75.7
Actinidia02187 Actinidia chinensis HOM05D002564 ORTHO05D003945 1.3e-07 59.3 37 75.7
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 1.3e-07 59.3 37 75.7
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 1.3e-07 59.3 37 75.7
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 1.3e-07 59.3 37 75.7
DCAR_008335 Daucus carota HOM05D002564 ORTHO05D024858 1.8e-07 58.9 37 75.7
FvH4_5g20220 Fragaria vesca HOM05D002564 ORTHO05D003945 1.8e-07 58.9 37 73.0
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 1.8e-07 58.9 37 73.0
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 1.8e-07 58.9 37 73.0
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 1.8e-07 58.9 37 73.0
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 1.8e-07 58.9 37 73.0
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 2.3e-07 58.5 37 81.1
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 3.9e-07 57.8 37 73.0
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 3.9e-07 57.8 38 76.3
Actinidia10860 Actinidia chinensis HOM05D002564 ORTHO05D003945 5.1e-07 57.4 37 73.0
CsaV3_3G049840 Cucumis sativus L. HOM05D002564 ORTHO05D003945 5.1e-07 57.4 37 73.0
Nitab4.5_0007628g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 5.1e-07 57.4 37 73.0
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 5.1e-07 57.4 37 73.0
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 8.7e-07 56.6 37 70.3
HanXRQChr03g0089811 Helianthus annuus HOM05D002564 ORTHO05D003945 1.1e-06 56.2 37 70.3
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.1e-06 56.2 38 76.3
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 1.1e-06 56.2 37 67.6
Hma1.2p1_1008F.1_g247170 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.5e-06 55.8 37 70.3
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 2.5e-06 55.1 37 67.6
Duzib084G1389 Durio zibethinus HOM05D002564 ORTHO05D003945 2.5e-06 55.1 37 75.7
Nn6g33792 Nelumbo nucifera HOM05D002564 ORTHO05D003945 2.5e-06 55.1 37 70.3
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 2.5e-06 55.1 37 67.6
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 3.3e-06 54.7 37 67.6
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 4.3e-06 54.3 37 67.6
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 4.3e-06 54.3 37 67.6
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 5.6e-06 53.9 37 75.7
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 5.6e-06 53.9 37 67.6
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 5.6e-06 53.9 37 67.6
THA.LOC104806682 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 5.6e-06 53.9 37 73.0
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 7.4e-06 53.5 37 67.6
PGR042G0532 Punica granatum HOM05D002564 ORTHO05D003945 7.4e-06 53.5 37 75.7
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 9.6e-06 53.1 37 75.7
Duzib205G0006 Durio zibethinus HOM05D002564 ORTHO05D003945 9.6e-06 53.1 37 73.0
Gorai.007G029900 Gossypium raimondii HOM05D002564 ORTHO05D003945 9.6e-06 53.1 37 73.0
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 9.6e-06 53.1 38 73.7


User provided reference genes

Program Settings