Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.6e-278 961.4 491 100.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 4.3e-225 784.6 503 79.7
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 4.0e-215 751.5 471 80.5
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 4.0e-199 698.4 490 74.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 5.3e-199 698.0 514 70.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 9.0e-199 697.2 491 73.9
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 9.0e-199 697.2 495 71.5
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.2e-197 692.6 492 71.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.2e-197 692.6 487 71.7
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 4.9e-197 691.4 497 72.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.7e-195 685.6 488 71.1
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 5.1e-194 681.4 489 70.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.1e-194 681.4 489 70.1
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 8.7e-194 680.6 494 70.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.5e-193 679.9 495 71.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.5e-193 679.1 495 72.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-193 679.1 492 69.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.7e-193 677.9 489 69.9
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.7e-193 677.2 489 69.7
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.6e-192 676.4 500 69.4
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.3e-192 674.5 500 69.2
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 4.1e-191 671.8 495 69.7
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 9.0e-191 670.6 505 69.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.6e-190 669.1 498 71.3
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.3e-189 666.8 481 71.3
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-189 666.4 501 70.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.2e-189 666.0 516 67.4
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-189 665.6 471 73.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.9e-188 662.9 489 71.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.2e-188 661.8 471 72.4
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.7e-187 659.1 514 68.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.3e-186 656.0 500 67.4
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 3.0e-186 655.6 491 69.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.0e-186 655.6 500 69.0
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.1e-185 653.7 496 69.0
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-185 653.7 492 69.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.0e-185 652.9 500 68.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.5e-185 652.5 509 67.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 9.7e-185 650.6 490 69.8
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.7e-184 649.8 485 69.5
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.8e-184 648.3 477 69.8
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 8.2e-184 647.5 511 65.6
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.4e-183 646.7 482 68.0
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 3.1e-183 645.6 479 68.9
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 2.0e-182 642.9 482 67.6
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.6e-182 642.5 491 68.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.6e-182 642.5 477 69.6
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 7.7e-182 641.0 471 69.4
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 7.7e-182 641.0 477 70.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.2e-181 639.4 494 66.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.2e-181 639.4 506 66.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 3.8e-181 638.6 502 67.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.2e-180 635.6 499 67.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 9.4e-180 634.0 462 69.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.1e-179 631.3 488 67.2
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 7.9e-179 630.9 492 66.7
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.0e-178 630.6 492 64.6
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.0e-178 630.6 492 64.8
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.0e-177 626.3 489 66.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.4e-177 625.2 470 68.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 9.7e-177 624.0 488 66.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.7e-176 622.1 504 63.9
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.7e-176 622.1 492 66.9
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.4e-175 620.2 498 65.1
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 9.1e-175 617.5 503 63.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 9.1e-175 617.5 503 63.6
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 5.9e-174 614.8 517 62.1
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.0e-173 614.0 505 63.6
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.0e-173 614.0 505 63.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.3e-173 613.6 504 63.3
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.7e-173 613.2 478 64.9
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.7e-173 613.2 478 64.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.7e-173 613.2 476 65.8
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 5.0e-173 611.7 488 63.5
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.5e-172 609.4 470 65.5
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.5e-172 609.4 472 65.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.2e-171 607.1 461 67.0
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.6e-171 606.7 500 63.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 3.6e-171 605.5 496 63.1
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.0e-170 604.0 499 61.9
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.0e-169 599.7 474 64.3
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.8e-168 595.1 414 72.2
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.1e-167 594.0 535 60.2
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.3e-167 591.7 468 65.2
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 7.2e-164 581.3 471 63.1
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 8.3e-160 567.8 463 64.6
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.4e-159 566.2 502 60.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 7.0e-159 564.7 506 58.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.8e-154 550.1 557 54.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 4.4e-153 545.4 495 59.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.5e-150 535.4 486 59.9
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.0e-149 534.3 396 68.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 5.0e-149 531.9 380 70.3
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 6.1e-147 525.0 500 56.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 8.0e-147 524.6 509 57.0
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.0e-145 520.0 428 61.4
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.0e-145 520.0 428 61.7
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 4.1e-143 512.3 468 59.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.6e-141 504.6 468 59.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.9e-135 486.9 491 57.8
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.6e-133 478.4 413 60.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.5e-126 456.1 356 67.4
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 3.1e-122 443.0 468 51.9
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 8.9e-122 441.4 438 52.5
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.4e-121 439.5 266 80.8
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.9e-120 436.4 294 81.0
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.9e-106 388.7 229 83.4
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 7.9e-94 348.6 267 66.7
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.0e-93 348.2 200 84.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.0e-93 346.7 201 83.1
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-87 328.2 240 66.7
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-87 328.2 240 66.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.3e-80 304.7 316 50.6
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.2e-80 303.9 248 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 6.5e-80 302.4 323 50.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 7.9e-78 295.4 327 47.7
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.7e-76 289.3 239 63.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-74 284.3 225 65.8
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.4e-74 283.9 188 75.0
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 3.6e-70 270.0 178 75.3
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 3.6e-70 270.0 173 75.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.6e-70 269.6 214 67.8
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.5e-65 254.6 227 61.2
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.5e-65 253.1 255 54.5
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.1e-60 238.4 171 70.2
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.2e-56 224.2 158 72.2
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.8e-50 204.5 162 61.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.9e-40 170.6 423 27.4
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.0e-37 160.2 155 56.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.5e-33 146.7 137 54.7
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.8e-32 143.7 229 41.0
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.6e-32 142.9 480 29.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-24 119.0 122 54.9
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 3.0e-24 117.5 142 45.8
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.9e-19 100.9 55 89.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.9e-19 100.1 101 51.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.0e-18 96.3 61 77.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 6.0e-17 93.2 270 30.0
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 6.6e-16 89.7 287 28.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.7e-11 75.1 57 57.9
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.9e-11 73.6 77 50.6
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.1e-09 68.2 68 61.8
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 2.8e-06 57.8 39 71.8
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 6.2e-06 56.6 78 41.0


User provided reference genes

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