Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 9.6e-62 240.0 120 100.0
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 9.0e-52 206.8 129 82.9
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 1.0e-47 193.4 129 78.3
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 6.7e-47 190.7 129 76.0
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.1e-46 189.9 129 77.5
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.5e-46 189.5 129 76.0
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 76.0
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 75.2
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 75.2
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 75.2
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 75.2
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.0e-46 189.1 129 75.2
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 2.5e-46 188.7 129 76.0
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 2.5e-46 188.7 129 75.2
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.3e-46 188.3 129 75.2
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 4.3e-46 188.0 129 76.0
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 5.7e-46 187.6 129 76.0
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 5.7e-46 187.6 129 76.0
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 9.7e-46 186.8 129 74.4
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 1.3e-45 186.4 129 73.6
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 3.7e-45 184.9 129 73.6
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 6.3e-45 184.1 129 76.0
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 8.2e-45 183.7 129 76.0
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 8.2e-45 183.7 129 72.1
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 1.4e-44 183.0 129 74.4
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 1.4e-44 183.0 129 75.2
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 1.8e-44 182.6 129 72.1
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 1.8e-44 182.6 129 72.1
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 1.8e-44 182.6 129 74.4
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.8e-44 182.6 129 73.6
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 2.4e-44 182.2 129 75.2
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 4.1e-44 181.4 129 73.6
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 5.3e-44 181.0 128 72.7
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 6.9e-44 180.6 129 72.1
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 9.1e-44 180.3 128 74.2
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.2e-43 179.9 128 71.9
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 1.5e-43 179.5 129 72.9
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.5e-43 179.5 129 74.4
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 1.5e-43 179.5 129 72.1
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 1.5e-43 179.5 129 72.1
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.5e-43 179.5 128 75.0
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 2.6e-43 178.7 129 72.1
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 2.6e-43 178.7 129 71.3
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 3.4e-43 178.3 129 71.3
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 4.5e-43 177.9 129 71.3
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 5.9e-43 177.6 129 71.3
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 5.9e-43 177.6 129 73.6
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 7.7e-43 177.2 129 72.1
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 1.3e-42 176.4 129 70.5
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 1.7e-42 176.0 129 71.3
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 2.2e-42 175.6 129 70.5
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 2.2e-42 175.6 129 69.8
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 2.9e-42 175.3 129 70.5
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 2.9e-42 175.3 129 70.5
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 2.9e-42 175.3 129 70.5
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 2.9e-42 175.3 129 70.5
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 2.9e-42 175.3 129 70.5
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 2.9e-42 175.3 129 71.3
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 71.3
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 70.5
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 70.5
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 70.5
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 70.5
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 3.8e-42 174.9 129 71.3
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 5.0e-42 174.5 129 70.5
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 5.0e-42 174.5 129 69.0
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 6.5e-42 174.1 129 69.8
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 6.5e-42 174.1 129 69.8
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 6.5e-42 174.1 129 69.8
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 6.5e-42 174.1 129 70.5
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 8.5e-42 173.7 129 69.8
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.5e-42 173.7 127 71.7
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 1.1e-41 173.3 129 68.2
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.1e-41 173.3 129 70.5
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.9e-41 172.6 129 69.8
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 3.2e-41 171.8 129 69.8
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 3.2e-41 171.8 129 69.8
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 3.2e-41 171.8 125 72.0
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.2e-41 171.8 129 69.8
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 4.2e-41 171.4 129 72.1
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 5.5e-41 171.0 129 69.0
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 5.5e-41 171.0 129 68.2
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 5.5e-41 171.0 129 69.8
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 7.2e-41 170.6 129 69.0
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 7.2e-41 170.6 126 71.4
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 1.6e-40 169.5 129 69.0
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 2.1e-40 169.1 129 69.0
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 2.1e-40 169.1 129 69.0
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 2.7e-40 168.7 129 69.0
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 3.6e-40 168.3 129 68.2
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 3.6e-40 168.3 129 68.2
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 3.6e-40 168.3 129 69.8
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.6e-40 168.3 139 66.9
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.7e-40 167.9 129 69.8
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 7.9e-40 167.2 129 68.2
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 1.8e-39 166.0 129 69.0
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 3.0e-39 165.2 129 66.7
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 5.1e-39 164.5 152 58.6
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 8.8e-39 163.7 129 65.9
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 8.8e-39 163.7 129 65.1
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.1e-38 163.3 131 66.4
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.1e-38 163.3 129 66.7
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 2.6e-38 162.2 129 69.0
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 5.7e-38 161.0 118 73.7
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 9.7e-38 160.2 129 68.2
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 1.3e-37 159.8 129 66.7
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.7e-37 159.5 120 69.2
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.2e-37 159.1 129 63.6
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 2.2e-37 159.1 167 53.3
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 3.7e-37 158.3 129 66.7
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 8.2e-37 157.1 129 63.6
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 8.2e-37 157.1 129 66.7
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 1.4e-36 156.4 129 62.8
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 4.1e-36 154.8 129 63.6
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 5.3e-36 154.5 130 66.2
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.6e-35 152.1 129 62.0
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 2.6e-35 152.1 127 64.6
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 3.5e-35 151.8 129 64.3
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 3.5e-35 151.8 129 62.0
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.9e-35 151.0 129 62.0
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 5.9e-35 151.0 129 58.1
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 7.7e-35 150.6 129 64.3
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 1.3e-34 149.8 129 62.0
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.7e-34 149.4 129 61.2
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 2.2e-34 149.1 127 60.6
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 3.8e-34 148.3 129 63.6
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 3.8e-34 148.3 129 60.5
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 8.5e-34 147.1 129 61.2
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.9e-33 146.0 129 60.5
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 3.2e-33 145.2 127 63.0
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 7.2e-33 144.1 101 75.2
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 7.2e-33 144.1 129 58.9
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 2.7e-32 142.1 129 61.2
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 3.6e-32 141.7 129 57.4
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.4e-31 139.8 111 65.8
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 3.9e-31 138.3 126 57.1
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 1.5e-30 136.3 121 62.0
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 5.7e-30 134.4 129 55.0
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 9.7e-30 133.7 129 55.8
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 1.3e-29 133.3 129 55.8
Haze_16588 Corylus avellana HOM05D003206 ORTHO05D014283 2.2e-29 132.5 82 81.7
Cfa012491 Carpinus fangiana HOM05D003206 ORTHO05D014283 6.3e-29 131.0 104 66.3
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 3.1e-28 128.6 127 55.1
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.1e-28 128.3 112 63.4
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 9.1e-28 127.1 127 54.3
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 9.1e-28 127.1 127 54.3
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 3.5e-27 125.2 119 62.2
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 3.5e-27 125.2 129 55.0
Haze_16591 Corylus avellana HOM05D003206 ORTHO05D014283 7.7e-27 124.0 82 76.8
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 2.9e-26 122.1 92 69.6
Atru.chr1.2869 Acer truncatum HOM05D003206 ORTHO05D014283 1.1e-25 120.2 82 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 1.1e-25 120.2 128 51.6
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.1e-25 120.2 127 52.8
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 9.4e-25 117.1 86 70.9
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 2.7e-24 115.5 129 52.7
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 1.8e-23 112.8 129 48.8
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 8.8e-23 110.5 77 76.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 4.5e-19 98.2 72 70.8
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 1.1e-17 93.6 77 66.2
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 3.6e-16 88.6 128 39.8
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 1.4e-15 86.7 89 55.1
BcaC06g35262 Brassica carinata HOM05D003206 ORTHO05D016781 5.2e-15 84.7 91 53.8
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 5.2e-15 84.7 91 53.8
C07p18050 Brassica napus HOM05D003206 ORTHO05D016781 2.0e-14 82.8 91 52.7
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 3.4e-14 82.0 42 92.9
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 9.8e-14 80.5 42 90.5
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.2e-13 79.3 91 50.5
CSS0045117 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 2.2e-13 79.3 41 90.2
BcaC03g17488 Brassica carinata HOM05D003206 ORTHO05D016781 6.3e-13 77.8 91 49.5
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 6.3e-13 77.8 91 49.5
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 6.3e-13 77.8 172 32.0
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 8.3e-13 77.4 91 50.5
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 8.3e-13 77.4 172 32.0
GSVIVG01015945001 Vitis vinifera HOM05D003206 ORTHO05D014283 8.3e-13 77.4 66 69.7
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 1.4e-12 76.6 91 49.5
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 2.4e-12 75.9 136 34.6
Manes.02G220960 Manihot esculenta HOM05D003206 ORTHO05D014283 9.1e-12 73.9 59 61.0
RcHm_v2.0_Chr2g0134741 Rosa chinensis HOM05D003206 ORTHO05D034830 1.6e-11 73.2 42 83.3
Manes.02G220810 Manihot esculenta HOM05D003206 ORTHO05D014283 4.5e-11 71.6 45 77.8
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 1.0e-10 70.5 42 81.0
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 1.0e-10 70.5 122 36.9
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 1.5e-09 66.6 39 87.2
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 9.5e-09 63.9 120 37.5
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 2.8e-08 62.4 120 33.3
Ciclev10027554m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.7e-08 61.6 42 71.4
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 8.0e-08 60.8 118 36.4
Haze_16585 Corylus avellana HOM05D003206 ORTHO05D005207 4.4e-06 55.1 60 56.7


User provided reference genes

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