Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.1e-103 379.0 188 100.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.1e-103 379.0 188 100.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.5e-90 336.3 204 86.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 5.0e-89 331.3 214 80.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-74 283.5 184 78.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.3e-73 280.0 198 74.2
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 9.4e-72 273.9 199 72.4
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.2e-68 262.7 154 87.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.0e-65 253.8 210 66.2
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-65 253.4 149 87.9
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 9.2e-59 230.7 205 62.4
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 5.9e-58 228.0 205 61.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.9e-56 223.0 201 59.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.6e-55 219.9 203 60.1
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.8e-55 219.2 201 61.2
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.1e-55 218.0 200 58.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.4e-54 216.9 201 58.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.4e-54 216.9 205 59.5
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.8e-54 216.5 203 60.6
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.0e-54 215.7 204 58.8
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.8e-54 214.5 203 58.6
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.4e-53 211.8 189 63.5
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 5.7e-53 211.5 202 57.4
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.7e-52 209.9 202 56.9
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-52 209.5 202 59.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.4e-51 206.1 202 58.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.2e-51 205.7 203 55.2
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 3.2e-51 205.7 204 56.9
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 3.2e-51 205.7 202 56.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.4e-51 204.9 201 56.2
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.4e-51 204.9 202 58.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 5.4e-51 204.9 201 55.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 9.2e-51 204.1 201 58.2
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.2e-50 203.8 203 57.6
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.2e-50 203.8 202 57.9
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.6e-50 203.4 202 57.9
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.6e-50 203.4 202 57.9
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.6e-50 201.8 203 56.2
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 7.8e-50 201.1 202 56.9
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.0e-49 200.7 209 56.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-49 200.7 202 56.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.3e-49 200.3 201 56.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.3e-49 200.3 201 56.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-49 199.9 202 57.4
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.7e-49 199.9 202 58.4
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.7e-49 199.9 204 55.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.9e-49 198.7 203 54.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 6.6e-49 198.0 199 56.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 6.6e-49 198.0 203 55.2
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-48 197.2 202 54.5
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.1e-48 197.2 206 58.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.5e-48 196.1 204 54.4
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 4.3e-48 195.3 213 52.6
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 7.3e-48 194.5 201 58.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.6e-47 193.4 201 51.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.6e-47 192.2 205 53.2
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.7e-47 191.8 201 58.2
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.4e-46 190.3 201 56.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.3e-46 189.5 202 53.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.2e-46 188.3 201 57.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 5.2e-46 188.3 197 55.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 8.9e-46 187.6 203 56.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.5e-45 186.8 204 53.4
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.6e-45 186.0 272 44.1
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 4.4e-45 185.3 201 57.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 4.4e-45 185.3 201 57.2
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.3e-44 183.7 202 55.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.2e-44 183.0 201 55.2
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.2e-44 183.0 214 51.4
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-44 182.6 204 50.5
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.7e-44 182.2 201 48.3
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-43 180.3 203 50.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.4e-43 180.3 201 55.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-43 179.9 204 52.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.9e-43 179.9 204 52.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.4e-43 179.5 204 50.0
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.4e-43 179.5 198 57.1
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.0e-43 177.9 204 50.5
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.2e-42 177.2 200 53.5
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-42 176.4 203 51.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.0e-42 176.4 203 51.7
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.7e-42 176.0 203 49.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 3.5e-42 175.6 203 54.7
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.6e-42 175.3 200 51.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.6e-42 175.3 207 51.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-41 173.7 203 51.2
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.3e-41 173.7 210 51.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.7e-41 173.3 197 52.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.7e-41 173.3 197 52.3
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 3.0e-41 172.6 201 48.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 3.0e-41 172.6 201 48.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 3.0e-41 172.6 201 48.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.0e-41 172.6 176 55.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.0e-41 171.8 199 53.8
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.6e-41 171.4 200 49.0
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.9e-40 169.9 202 52.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.5e-40 169.5 195 51.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.5e-40 169.5 215 49.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.3e-40 169.1 200 49.5
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.3e-40 168.7 167 56.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 5.6e-40 168.3 198 49.0
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 9.5e-40 167.5 203 46.8
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.2e-39 167.2 263 42.2
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-39 166.8 202 52.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.6e-39 166.8 201 51.7
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.8e-39 166.0 200 47.5
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 2.8e-39 166.0 93 86.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.8e-39 166.0 328 36.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 4.7e-39 165.2 200 50.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 6.2e-39 164.9 206 48.1
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.4e-38 163.7 198 50.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.4e-38 163.7 165 57.0
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.8e-38 163.3 200 49.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 6.8e-38 161.4 177 53.7
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.8e-38 161.4 200 47.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 8.9e-38 161.0 175 52.0
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-37 160.6 201 47.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.2e-37 160.6 201 47.8
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.6e-37 159.5 207 46.9
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 4.4e-37 158.7 198 48.0
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 7.5e-37 157.9 203 50.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 8.3e-36 154.5 201 50.2
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.4e-35 152.9 203 45.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.1e-35 151.4 182 48.4
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 9.2e-35 151.0 197 47.2
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.2e-34 150.6 182 45.6
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 3.5e-34 149.1 226 45.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 3.5e-34 149.1 196 47.4
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.6e-34 148.7 207 46.4
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.1e-33 145.2 119 67.2
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 8.6e-33 144.4 203 44.8
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.5e-32 143.7 201 46.3
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.9e-32 143.3 201 44.8
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 5.6e-32 141.7 203 42.9
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.6e-31 140.2 202 41.6
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 3.6e-31 139.0 198 44.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.4e-30 136.3 193 45.1
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.0e-29 133.3 202 45.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.6e-29 132.9 191 45.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.3e-28 130.6 169 45.0
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.4e-27 127.1 169 47.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.9e-27 126.7 111 60.4
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.0e-25 119.4 170 44.7
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.3e-24 115.5 171 43.9
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.2e-23 114.0 151 47.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.6e-23 113.6 170 41.2
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 4.7e-23 112.1 140 45.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.2e-23 111.7 198 38.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.8e-22 110.2 167 42.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 9.9e-21 104.4 126 50.8
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.2e-20 103.2 151 49.0
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.4e-20 101.7 149 44.3
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-19 99.8 147 46.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.2e-19 99.4 94 52.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.3e-17 94.0 153 41.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.7e-17 93.6 88 54.5
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.6e-17 91.7 125 48.8
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 2.5e-16 89.7 188 37.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 3.1e-14 82.8 168 36.9
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.0e-14 82.4 151 41.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.9e-14 81.6 40 100.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.5e-13 80.5 44 84.1
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.4e-13 79.3 44 81.8
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.4e-13 79.3 44 81.8
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.8e-12 75.9 51 66.7
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.2e-11 72.8 123 39.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-09 67.4 103 40.8
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.3e-09 67.4 103 40.8
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.9e-09 65.9 103 40.8
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.7e-09 65.1 82 47.6
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-08 63.5 103 39.8
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-08 63.5 103 39.8
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 9.6e-08 61.2 83 43.4
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 6.2e-07 58.5 103 41.7
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 6.9e-06 55.1 86 39.5


User provided reference genes

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