Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.0e-76 290.0 150 100.0
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 1.9e-38 162.9 127 70.9
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 1.2e-37 160.2 148 64.9
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.0e-36 157.1 154 64.9
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 1.0e-36 157.1 132 67.4
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 1.9e-35 152.9 132 68.2
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 1.9e-35 152.9 132 68.2
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 6.2e-34 147.9 127 66.9
Haze_24937 Corylus avellana HOM05D007277 ORTHO05D006336 6.4e-31 137.9 110 69.1
Cfa002609 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.9e-30 136.3 129 64.3
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 5.1e-28 128.3 200 47.5
Haze_02030 Corylus avellana HOM05D007277 ORTHO05D006336 3.0e-20 102.4 140 50.7
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 1.9e-19 99.8 168 42.9
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 3.7e-18 95.5 157 42.7
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.4e-17 93.6 148 35.8
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 5.3e-17 91.7 167 39.5
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.2e-16 90.5 148 35.8
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 5.9e-16 88.2 153 42.5
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-15 86.7 111 47.7
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-15 86.7 107 46.7
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 2.2e-15 86.3 153 41.8
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 5.0e-15 85.1 148 38.5
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.0e-15 85.1 147 38.8
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.0e-15 85.1 148 38.5
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 8.5e-15 84.3 130 42.3
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.4e-14 83.6 111 50.5
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.9e-14 83.2 101 43.6
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.9e-14 83.2 139 42.4
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.9e-14 83.2 139 41.7
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 4.2e-14 82.0 125 45.6
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.6e-13 80.1 142 39.4
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 4.6e-13 78.6 153 36.6
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 4.6e-13 78.6 142 38.0
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 7.9e-13 77.8 130 38.5
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 1.0e-12 77.4 111 43.2
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 1.0e-12 77.4 155 38.7
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 1.8e-12 76.6 142 38.7
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.3e-12 76.3 142 38.7
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 3.0e-12 75.9 107 46.7
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 3.0e-12 75.9 127 38.6
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.7e-12 74.7 121 40.5
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 8.8e-12 74.3 150 34.7
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 8.8e-12 74.3 120 36.7
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 1.5e-11 73.6 108 38.0
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 1.9e-11 73.2 150 42.0
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 1.9e-11 73.2 141 40.4
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 1.9e-11 73.2 115 39.1
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 2.5e-11 72.8 133 39.8
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 5.7e-11 71.6 124 40.3
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.4e-11 71.2 114 37.7
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 7.4e-11 71.2 109 38.5
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 1.3e-10 70.5 129 39.5
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 1.3e-10 70.5 109 41.3
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 2.2e-10 69.7 108 40.7
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 2.2e-10 69.7 109 40.4
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 2.8e-10 69.3 106 36.8
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.8e-10 69.3 105 39.0
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 3.7e-10 68.9 107 44.9
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 6.3e-10 68.2 107 41.1
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 8.2e-10 67.8 133 37.6
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 1.1e-09 67.4 103 43.7
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.8e-09 66.6 101 35.6
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 1.8e-09 66.6 107 38.3
Haze_24923 Corylus avellana HOM05D007277 ORTHO05D006336 1.8e-09 66.6 77 53.2
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.4e-09 66.2 106 35.8
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 2.4e-09 66.2 111 39.6
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.4e-09 66.2 124 35.5
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 5.3e-09 65.1 90 42.2
TAR371G0786 Trochodendron aralioides HOM05D012741 ORTHO05D006336 5.3e-09 65.1 131 35.9
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 6.9e-09 64.7 129 38.0
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 6.9e-09 64.7 136 35.3
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 9.1e-09 64.3 123 38.2
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.0e-08 63.2 106 40.6
TAR371G1039 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.0e-08 63.2 133 34.6
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 2.6e-08 62.8 114 35.1
Potri.017G019000 Populus trichocarpa HOM05D010635 ORTHO05D006336 4.5e-08 62.0 106 37.7
QL11p034196 Quercus lobata HOM05D007277 ORTHO05D006336 4.5e-08 62.0 115 40.0
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 5.9e-08 61.6 101 40.6
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 5.9e-08 61.6 104 38.5
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 7.7e-08 61.2 94 40.4
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.0e-07 60.8 106 34.9
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 1.0e-07 60.8 120 38.3
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.3e-07 60.5 118 34.7
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 2.9e-07 59.3 108 38.9
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 2.9e-07 59.3 107 36.4
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.8e-07 58.9 105 36.2
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 6.5e-07 58.2 95 32.6
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 6.5e-07 58.2 127 33.9
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.4e-06 57.0 107 38.3
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.4e-06 57.0 108 32.4
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 1.9e-06 56.6 106 36.8
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 2.5e-06 56.2 118 37.3
TAR371G1152 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.5e-06 56.2 137 31.4
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 3.2e-06 55.8 91 41.8
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.2e-06 55.5 78 42.3
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 4.2e-06 55.5 111 34.2
TAR636G1074 Trochodendron aralioides HOM05D012741 ORTHO05D006336 4.2e-06 55.5 108 31.5
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 5.5e-06 55.1 106 35.8
Sed0003907 Sechium edule HOM05D014519 ORTHO05D006336 7.2e-06 54.7 145 29.7


User provided reference genes

Program Settings