Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.1e-116 421.4 209 100.0
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.1e-111 404.4 208 96.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.2e-106 389.0 208 92.8
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.0e-106 387.9 208 92.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.5e-73 279.3 213 69.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.0e-54 216.5 224 52.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.4e-54 215.7 224 52.2
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 7.3e-49 198.0 211 55.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.4e-47 193.7 195 55.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.2e-47 191.8 206 55.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.2e-47 191.8 206 55.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.8e-47 191.4 210 53.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.9e-47 191.0 206 55.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.5e-46 190.3 210 51.9
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.0e-46 189.9 215 50.2
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-46 189.5 206 55.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.6e-46 189.5 209 52.6
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 7.6e-46 188.0 209 52.6
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 9.9e-46 187.6 218 48.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.7e-45 186.8 210 52.9
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.7e-45 186.8 210 52.9
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.9e-45 186.0 207 51.2
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 4.9e-45 185.3 210 51.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 8.4e-45 184.5 225 51.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.9e-44 183.3 218 47.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.2e-44 182.6 216 49.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.2e-44 182.6 217 50.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.2e-44 182.2 216 49.1
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.1e-44 181.4 212 53.3
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.1e-44 181.4 218 52.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-43 180.6 212 53.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-43 180.3 216 49.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 6.0e-43 178.3 217 47.5
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.3e-42 176.4 219 48.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.0e-42 176.0 209 47.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.7e-42 174.5 219 48.9
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 8.7e-42 174.5 205 48.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.1e-41 174.1 209 48.8
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.5e-41 173.7 201 51.2
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-41 173.7 222 49.5
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.9e-41 173.3 204 52.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 4.3e-41 172.2 226 48.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 9.6e-41 171.0 215 51.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.6e-40 170.2 201 48.3
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.1e-40 169.9 212 46.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.8e-40 169.5 208 46.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 4.8e-40 168.7 203 47.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 6.2e-40 168.3 218 45.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-39 167.5 217 47.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.0e-39 165.6 208 49.0
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 5.3e-39 165.2 206 47.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.5e-38 163.7 209 46.4
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.6e-38 162.9 215 48.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.4e-38 162.5 205 45.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.4e-38 162.5 207 45.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.4e-38 162.2 212 44.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 9.9e-38 161.0 232 44.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.3e-37 160.6 182 48.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.2e-37 159.8 217 46.1
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.9e-37 159.5 208 45.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 4.9e-37 158.7 209 44.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.1e-36 157.5 226 40.7
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.1e-36 157.5 226 40.7
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-36 157.5 208 45.2
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-36 157.5 204 46.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.1e-36 157.5 205 46.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 4.2e-36 155.6 210 43.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.2e-36 155.6 217 46.1
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 5.4e-36 155.2 217 46.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.1e-36 154.8 209 47.8
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.1e-36 154.8 211 47.4
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.2e-35 154.1 209 44.5
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-35 152.9 204 45.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.7e-35 152.9 204 45.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.7e-35 152.9 206 45.6
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.7e-35 152.9 208 44.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.5e-35 152.5 221 42.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 4.6e-35 152.1 210 46.7
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 4.6e-35 152.1 204 45.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 7.8e-35 151.4 204 43.6
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 7.8e-35 151.4 212 42.9
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.0e-34 151.0 209 46.4
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.0e-34 151.0 204 45.1
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.3e-34 149.8 207 46.4
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.1e-34 148.7 211 43.1
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 8.7e-34 147.9 212 43.4
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 8.7e-34 147.9 183 45.9
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.1e-33 147.5 204 45.6
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.5e-33 147.1 209 42.6
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 2.5e-33 146.4 210 44.3
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.4e-31 139.8 206 41.3
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.4e-31 139.8 213 37.1
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.3e-31 138.7 207 44.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 9.0e-31 137.9 203 40.4
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-30 137.1 211 37.4
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.8e-30 135.2 210 41.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 7.6e-30 134.8 140 52.9
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 8.4e-29 131.3 206 38.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-28 131.0 198 41.9
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.2e-28 129.4 214 42.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.6e-27 127.1 210 41.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.1e-27 126.7 228 37.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.7e-27 126.3 204 42.6
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.7e-27 126.3 175 41.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.6e-27 125.6 170 45.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 6.0e-27 125.2 140 50.0
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 7.9e-27 124.8 145 48.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 7.9e-27 124.8 145 48.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.7e-26 121.7 221 33.5
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.1e-25 120.9 228 36.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.1e-25 120.9 150 47.3
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.5e-25 120.6 213 40.4
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.6e-24 117.1 204 38.7
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.2e-24 115.2 208 40.9
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 6.2e-24 115.2 195 38.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.4e-23 114.0 142 41.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.4e-23 113.2 209 36.4
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.1e-23 112.8 220 35.9
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.0e-23 112.5 103 54.4
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.0e-22 110.2 204 37.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.6e-22 109.8 71 70.4
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.4e-22 109.4 205 36.6
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 5.8e-22 108.6 176 41.5
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.9e-21 106.3 135 42.2
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.9e-20 103.6 204 33.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 3.2e-20 102.8 207 33.8
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.1e-20 101.7 90 55.6
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.1e-19 100.1 202 36.1
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.5e-19 99.4 201 34.3
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.6e-19 99.0 228 34.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.9e-18 95.9 173 36.4
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.3e-16 90.9 233 31.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.3e-16 90.9 74 59.5
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.8e-16 89.7 108 46.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.7e-16 89.4 102 45.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 4.0e-15 85.9 210 32.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.0e-15 85.9 219 32.9
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 5.3e-15 85.5 157 38.9
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.0e-14 83.6 93 38.7
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.1e-12 77.8 156 37.2
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 5.5e-12 75.5 123 38.2
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-11 73.6 133 37.6
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.5e-11 72.8 182 32.4
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.1e-09 67.8 67 40.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.9e-09 67.0 192 28.1
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.9e-09 67.0 100 39.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.5e-09 66.6 184 26.6
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 3.3e-09 66.2 115 40.0
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.4e-09 65.1 52 51.9
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.2e-08 63.5 61 47.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.7e-08 62.8 114 32.5
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.3e-08 62.0 64 43.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.1e-07 61.2 63 41.3
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-07 60.8 115 39.1
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.8e-07 60.5 135 36.3


User provided reference genes

Program Settings