Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.7e-43 176.4 89 100.0
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 5.0e-39 164.1 89 94.4
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 2.4e-33 145.2 87 87.4
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 2.4e-33 145.2 87 87.4
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.3e-33 144.1 91 83.5
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.7e-31 139.0 72 95.8
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.7e-31 139.0 72 95.8
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.7e-31 139.0 72 95.8
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.4e-27 124.4 71 84.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 4.4e-27 124.4 71 84.5
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 9.7e-27 123.2 73 84.9
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.2e-26 122.1 69 87.0
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 3.1e-25 118.2 67 83.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.1e-25 117.9 65 84.6
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.1e-25 117.9 65 84.6
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 4.1e-25 117.9 74 81.1
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 7.0e-25 117.1 75 77.3
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 7.0e-25 117.1 73 75.3
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.2e-24 116.3 65 81.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.2e-24 116.3 64 84.4
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.2e-24 116.3 72 77.8
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.6e-24 115.9 76 75.0
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 67 82.1
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.6e-24 115.9 64 84.4
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.6e-24 115.9 65 84.6
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-24 115.5 67 82.1
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-24 115.5 67 82.1
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-24 115.5 67 82.1
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 84.4
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 84.4
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 80.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.7e-24 115.2 75 72.0
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 82.1
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 3.5e-24 114.8 63 85.7
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 82.1
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.5e-24 114.8 73 72.6
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 4.5e-24 114.4 65 80.0
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 4.5e-24 114.4 64 81.2
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 4.5e-24 114.4 63 84.1
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 4.5e-24 114.4 64 84.4
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 4.5e-24 114.4 63 84.1
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 5.9e-24 114.0 64 84.4
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 5.9e-24 114.0 64 84.4
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 5.9e-24 114.0 64 79.7
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-24 114.0 67 80.6
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 5.9e-24 114.0 67 80.6
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 5.9e-24 114.0 66 80.3
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.9e-24 114.0 62 85.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 5.9e-24 114.0 63 84.1
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 7.7e-24 113.6 64 82.8
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 7.7e-24 113.6 66 81.8
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.7e-24 113.6 67 80.6
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 7.7e-24 113.6 69 75.4
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 7.7e-24 113.6 63 84.1
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 7.7e-24 113.6 64 84.4
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 7.7e-24 113.6 63 82.5
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 7.7e-24 113.6 63 82.5
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.0e-23 113.2 69 78.3
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 1.0e-23 113.2 64 82.8
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 1.0e-23 113.2 64 81.2
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.3e-23 112.8 66 80.3
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.7e-23 112.5 64 82.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.2e-23 112.1 65 78.5
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.2e-23 112.1 64 78.1
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.2e-23 112.1 64 82.8
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.2e-23 112.1 64 82.8
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.2e-23 112.1 64 81.2
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.9e-23 111.7 63 79.4
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.9e-23 111.7 63 81.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.9e-23 111.7 63 81.0
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 3.8e-23 111.3 66 78.8
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 3.8e-23 111.3 67 77.6
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 6.5e-23 110.5 66 77.3
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 6.5e-23 110.5 63 82.5
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 6.5e-23 110.5 63 82.5
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 6.5e-23 110.5 67 77.6
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 8.5e-23 110.2 66 77.3
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 8.5e-23 110.2 63 82.5
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.1e-22 109.8 66 77.3
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-22 109.8 63 79.4
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-22 109.8 63 79.4
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.5e-22 109.4 64 76.6
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.5e-22 109.4 75 73.3
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 1.9e-22 109.0 67 76.1
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.9e-22 109.0 63 81.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.9e-22 109.0 67 74.6
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 1.9e-22 109.0 66 75.8
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.9e-22 109.0 69 73.9
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 2.5e-22 108.6 74 73.0
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.2e-22 108.2 67 74.6
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 3.2e-22 108.2 64 78.1
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 4.2e-22 107.8 66 72.7
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 9.4e-22 106.7 66 74.2
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 9.4e-22 106.7 66 72.7
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.2e-21 106.3 61 78.7
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 1.6e-21 105.9 66 75.8
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.6e-21 105.9 66 71.2
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.6e-21 105.9 66 72.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 2.7e-21 105.1 66 74.2
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 2.7e-21 105.1 71 67.6
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.7e-21 105.1 66 71.2
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.7e-21 105.1 63 76.2
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.6e-21 104.8 66 71.2
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 3.6e-21 104.8 66 74.2
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.6e-21 104.8 66 71.2
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.6e-21 104.8 66 71.2
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 4.7e-21 104.4 67 71.6
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 6.1e-21 104.0 67 71.6
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 8.0e-21 103.6 66 72.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 8.0e-21 103.6 66 72.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 8.0e-21 103.6 66 72.7
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 8.0e-21 103.6 66 72.7
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 1.0e-20 103.2 67 70.1
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 2.3e-20 102.1 66 72.7
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.3e-20 102.1 60 80.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.5e-19 99.4 80 65.0
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 3.7e-18 94.7 98 52.0
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.3e-15 85.5 49 79.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.6e-15 83.6 47 76.6
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.1e-14 83.2 63 61.9
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.8e-12 75.9 37 81.1
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.3e-12 75.5 71 54.9
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 3.0e-12 75.1 36 83.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 4.0e-12 74.7 62 53.2
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-09 66.6 39 84.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.4e-09 65.5 36 72.2
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.1e-09 65.1 36 72.2
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.6e-08 62.8 35 68.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.6e-08 62.8 35 68.6
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 3.5e-08 61.6 47 59.6
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 3.5e-08 61.6 47 59.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.0e-07 60.1 60 50.0
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.7e-07 59.3 55 52.7
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 2.3e-07 58.9 39 56.4
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 3.3e-06 55.1 54 48.1


User provided reference genes

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