Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.1e-71 271.2 157 100.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.9e-50 202.2 141 82.3
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.4e-41 173.3 117 84.6
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.1e-24 116.3 66 90.9
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 6.5e-18 94.7 152 53.9
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 2.1e-16 89.7 58 82.8
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 3.6e-16 89.0 81 67.9
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 4.7e-16 88.6 67 71.6
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 6.1e-16 88.2 73 68.5
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 1.4e-15 87.0 80 67.5
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 2.3e-15 86.3 53 81.1
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 3.0e-15 85.9 76 61.8
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.2e-14 84.0 60 71.7
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.2e-14 84.0 80 65.0
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 2.0e-14 83.2 77 64.9
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 3.4e-14 82.4 73 64.4
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 5.7e-14 81.6 67 68.7
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 9.8e-14 80.9 82 58.5
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 9.8e-14 80.9 77 66.2
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.3e-13 80.5 71 67.6
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.7e-13 80.1 69 66.7
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.2e-13 79.7 63 68.3
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 4.9e-13 78.6 77 64.9
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 4.9e-13 78.6 72 62.5
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 8.3e-13 77.8 143 54.5
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 8.3e-13 77.8 79 58.2
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.1e-12 77.4 61 70.5
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.4e-12 77.0 67 67.2
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.4e-12 77.0 67 67.2
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.4e-12 77.0 69 68.1
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.4e-12 77.0 84 58.3
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 1.8e-12 76.6 78 59.0
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 3.1e-12 75.9 60 65.0
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 4.1e-12 75.5 79 60.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.4e-12 75.1 154 51.9
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 5.4e-12 75.1 70 65.7
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 5.4e-12 75.1 84 53.6
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 7.0e-12 74.7 77 54.5
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.2e-11 73.9 68 63.2
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 2.7e-11 72.8 71 63.4
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 4.5e-11 72.0 57 70.2
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 5.9e-11 71.6 75 58.7
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 5.9e-11 71.6 61 63.9
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 7.8e-11 71.2 77 53.2
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 1.0e-10 70.9 74 60.8
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 1.0e-10 70.9 60 65.0
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.7e-10 70.1 59 66.1
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 2.9e-10 69.3 69 62.3
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 2.9e-10 69.3 75 57.3
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 5.0e-10 68.6 67 59.7
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 1.1e-09 67.4 117 47.0
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 1.1e-09 67.4 69 60.9
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 1.5e-09 67.0 79 54.4
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.9e-09 66.6 68 61.8
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 3.3e-09 65.9 76 50.0
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 3.3e-09 65.9 81 49.4
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 4.3e-09 65.5 77 58.4
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 4.3e-09 65.5 77 55.8
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 9.5e-09 64.3 78 56.4
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 1.6e-08 63.5 75 52.0
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 2.1e-08 63.2 88 50.0
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 2.1e-08 63.2 55 61.8
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.8e-08 62.8 77 51.9
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 3.6e-08 62.4 63 58.7
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 3.6e-08 62.4 100 46.0
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 1.0e-07 60.8 95 48.4
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 1.0e-07 60.8 78 52.6
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 2.3e-07 59.7 50 66.0
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 2.3e-07 59.7 100 46.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 2.3e-07 59.7 100 46.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 2.3e-07 59.7 64 60.9
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 3.0e-07 59.3 68 55.9
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 4.0e-07 58.9 92 48.9
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 6.8e-07 58.2 70 54.3
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 6.8e-07 58.2 68 54.4
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.2e-06 57.4 72 56.9
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 1.5e-06 57.0 77 48.1
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 4.4e-06 55.5 87 46.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 4.4e-06 55.5 87 46.0
Glyma.12G197200 Glycine max HOM05D007783 ORTHO05D009740 4.4e-06 55.5 72 50.0
SHI10279 Sapria himalayana HOM05D007783 ORTHO05D009740 4.4e-06 55.5 72 48.6
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 9.8e-06 54.3 73 45.2


User provided reference genes

Program Settings