Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.1e-57 226.5 121 100.0
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 7.5e-54 213.8 116 99.1
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 8.8e-47 190.3 115 87.8
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 1.7e-29 132.9 118 62.7
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 6.4e-29 131.0 118 61.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 3.6e-24 115.2 120 60.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 1.2e-22 110.2 126 55.6
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 4.4e-22 108.2 123 53.7
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.8e-22 107.8 124 52.4
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.7e-21 106.3 123 55.3
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.9e-21 104.8 127 48.8
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 4.9e-21 104.8 130 51.5
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.4e-20 103.2 121 53.7
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.9e-20 102.8 122 54.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 2.4e-20 102.4 116 51.7
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.0e-20 100.9 122 53.3
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 9.2e-20 100.5 128 50.8
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 9.2e-20 100.5 122 54.9
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.0e-19 99.4 121 50.4
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 2.0e-19 99.4 116 50.0
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 3.5e-19 98.6 133 50.4
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.6e-19 98.2 119 51.3
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 4.6e-19 98.2 120 52.5
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 4.6e-19 98.2 120 48.3
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.0e-18 97.1 122 53.3
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-18 96.7 130 49.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.3e-18 96.7 129 48.8
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.3e-18 96.7 125 49.6
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.3e-18 95.9 115 51.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.3e-18 95.9 125 48.8
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.3e-18 95.9 134 48.5
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.0e-18 95.5 117 50.4
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.0e-18 95.5 134 49.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.9e-18 95.1 135 48.1
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 8.6e-18 94.0 116 49.1
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 8.6e-18 94.0 121 50.4
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.5e-17 93.2 126 49.2
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.9e-17 92.8 122 48.4
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.5e-17 92.4 122 48.4
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.3e-17 92.0 118 49.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 4.3e-17 91.7 119 48.7
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 4.3e-17 91.7 119 48.7
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 4.3e-17 91.7 121 49.6
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 9.5e-17 90.5 119 48.7
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.2e-16 90.1 122 49.2
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.2e-16 90.1 120 48.3
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 3.6e-16 88.6 117 46.2
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 6.2e-16 87.8 117 46.2
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 8.1e-16 87.4 122 46.7
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.1e-15 87.0 119 46.2
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.1e-15 87.0 133 50.4
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.0e-15 85.1 117 47.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.0e-15 85.1 117 47.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.2e-15 84.7 116 50.0
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.2e-14 83.6 119 46.2
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.5e-14 83.2 119 51.3
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 2.6e-14 82.4 122 45.1
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.4e-14 82.0 116 46.6
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 3.4e-14 82.0 121 45.5
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.8e-14 81.3 127 44.9
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 5.8e-14 81.3 125 43.2
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 5.8e-14 81.3 120 45.0
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 7.5e-14 80.9 129 46.5
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 9.8e-14 80.5 122 46.7
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 9.8e-14 80.5 124 47.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.3e-13 80.1 117 44.4
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.7e-13 79.7 135 45.2
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.9e-13 79.0 133 45.9
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 4.9e-13 78.2 120 45.8
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.9e-13 78.2 122 49.2
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 6.4e-13 77.8 124 46.8
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.4e-13 77.8 119 46.2
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.4e-13 77.8 133 44.4
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.3e-13 77.4 122 45.1
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.9e-12 76.3 120 44.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 1.9e-12 76.3 119 42.0
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.4e-12 75.9 126 50.0
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.4e-12 75.9 133 42.9
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.2e-12 75.5 130 43.8
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 5.4e-12 74.7 128 44.5
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 9.2e-12 73.9 117 46.2
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 9.2e-12 73.9 121 44.6
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 9.2e-12 73.9 126 46.0
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 9.2e-12 73.9 134 37.3
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.2e-11 73.6 124 47.6
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 1.2e-11 73.6 117 44.4
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-11 73.6 133 39.8
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-11 73.2 133 43.6
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 2.1e-11 72.8 116 39.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.1e-11 72.8 118 43.2
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.1e-11 72.8 129 42.6
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.7e-11 72.4 128 41.4
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.7e-11 72.4 126 41.3
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.5e-11 72.0 119 43.7
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 3.5e-11 72.0 123 48.0
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.0e-10 70.5 124 42.7
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.0e-10 70.5 117 42.7
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-10 70.1 122 42.6
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.7e-10 69.7 115 44.3
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 2.3e-10 69.3 118 45.8
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 2.3e-10 69.3 118 45.8
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.3e-10 69.3 104 45.2
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 6.6e-10 67.8 120 44.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 6.6e-10 67.8 118 44.9
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 6.6e-10 67.8 130 44.6
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 8.6e-10 67.4 123 43.9
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 8.6e-10 67.4 122 40.2
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.5e-09 66.6 118 44.9
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 1.5e-09 66.6 118 44.1
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.5e-09 66.6 118 44.1
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 3.3e-09 65.5 116 38.8
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 4.3e-09 65.1 124 48.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 4.3e-09 65.1 124 48.4
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 7.3e-09 64.3 120 42.5
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 7.3e-09 64.3 120 42.5
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 2.8e-08 62.4 116 42.2
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 4.7e-08 61.6 114 38.6
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 6.2e-08 61.2 55 50.9
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.4e-07 60.1 124 44.4
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.4e-07 60.1 131 38.2
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.8e-07 59.7 126 35.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 3.1e-07 58.9 122 37.7
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.2e-07 58.2 126 38.1
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.2e-07 58.2 105 37.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.2e-07 58.2 119 41.2
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 5.2e-07 58.2 114 39.5
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 8.9e-07 57.4 115 40.0
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.5e-06 56.6 118 41.5
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.5e-06 56.6 118 34.7
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.0e-06 56.2 120 35.8
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 3.4e-06 55.5 52 53.8
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 5.8e-06 54.7 118 40.7
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 5.8e-06 54.7 42 57.1
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.8e-06 54.7 127 37.0
CAN.G362.43 Capsicum annuum HOM05D003841 ORTHO05D004602 7.6e-06 54.3 42 54.8


User provided reference genes

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