Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021058 Carpinus fangiana HOM05D005632 ORTHO05D006870 3.4e-62 241.5 122 100.0
Cfa009317 Carpinus fangiana HOM05D005632 ORTHO05D006870 2.3e-55 218.8 122 93.4
Haze_12372 Corylus avellana HOM05D005632 ORTHO05D006870 1.6e-48 196.1 121 85.1
QL03p054693 Quercus lobata HOM05D005632 ORTHO05D006870 5.6e-41 171.0 122 79.5
CiPaw.06G099900 Carya illinoinensis HOM05D005632 ORTHO05D006870 1.1e-36 156.8 121 73.6
Atru.chr11.2274 Acer truncatum HOM05D005632 ORTHO05D006870 3.9e-34 148.3 121 68.6
Prupe.1G232800 Prunus persica HOM05D005632 ORTHO05D006870 4.7e-32 141.4 124 69.4
Potri.008G178300 Populus trichocarpa HOM05D005632 ORTHO05D006870 9.9e-30 133.7 121 62.8
Thecc.02G274700 Theobroma cacao HOM05D005632 ORTHO05D006870 1.3e-29 133.3 121 63.6
Dinv14805 Davidia involucrata HOM05D005632 ORTHO05D006870 4.9e-29 131.3 121 62.0
Sabra08G0136100 Salix brachista HOM05D005632 ORTHO05D006870 1.4e-28 129.8 122 61.5
Sabra10G0048400 Salix brachista HOM05D005632 ORTHO05D006870 1.9e-28 129.4 121 59.5
Duzib248G1043 Durio zibethinus HOM05D005632 ORTHO05D006870 2.4e-28 129.0 121 60.3
TAR374G0791 Trochodendron aralioides HOM05D005632 ORTHO05D006870 9.3e-28 127.1 123 61.8
COL.COLO4_12811 Corchorus olitorius HOM05D005632 ORTHO05D006870 1.2e-27 126.7 123 64.2
CiPaw.05G114600 Carya illinoinensis HOM05D005632 ORTHO05D006870 2.1e-27 125.9 121 60.3
FvH4_4g24210 Fragaria vesca HOM05D005632 ORTHO05D006870 2.7e-27 125.6 129 59.7
FAN07G2757 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.7e-27 125.6 129 59.7
FAN12G4104 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.7e-27 125.6 129 59.7
FAN17G2842 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.7e-27 125.6 129 59.7
MD13G1113300 Malus domestica HOM05D005632 ORTHO05D006870 6.0e-27 124.4 124 60.5
RcHm_v2.0_Chr4g0431051 Rosa chinensis HOM05D005632 ORTHO05D006870 6.0e-27 124.4 126 60.3
CANSAT01G1127 Cannabis sativa HOM05D005632 ORTHO05D006870 1.3e-26 123.2 124 58.9
CANSAT01G1284 Cannabis sativa HOM05D005632 ORTHO05D006870 1.3e-26 123.2 124 58.9
MD16G1112600 Malus domestica HOM05D005632 ORTHO05D006870 1.3e-26 123.2 124 60.5
TAR622G0018 Trochodendron aralioides HOM05D005632 ORTHO05D006870 1.3e-26 123.2 123 61.0
Potri.010G056800 Populus trichocarpa HOM05D005632 ORTHO05D006870 1.7e-26 122.9 121 58.7
FAN22G2239 Fragaria x ananassa HOM05D005632 ORTHO05D006870 3.9e-26 121.7 129 58.9
Gohir.D01G154266 Gossypium hirsutum HOM05D005632 ORTHO05D006870 4.8e-24 114.8 124 57.3
Gorai.002G191000 Gossypium raimondii HOM05D005632 ORTHO05D006870 4.8e-24 114.8 124 57.3
AUR62024154 Chenopodium quinoa HOM05D005632 ORTHO05D006870 8.1e-24 114.0 122 55.7
Gohir.A01G155800 Gossypium hirsutum HOM05D005632 ORTHO05D006870 1.1e-23 113.6 124 57.3
PSO782G1057 Papaver somniferum HOM05D005632 ORTHO05D006870 1.1e-23 113.6 128 53.9
Lj6C822T14 Lonicera japonica HOM05D005632 ORTHO05D006870 1.8e-23 112.8 123 53.7
Eucgr.B03464 Eucalyptus grandis HOM05D005632 ORTHO05D006870 2.4e-23 112.5 121 57.9
Medtr8g080180 Medicago truncatula HOM05D005632 ORTHO05D006870 2.4e-23 112.5 122 55.7
Aqoxy5G03509 Aquilegia oxysepala HOM05D005632 ORTHO05D006870 3.1e-23 112.1 123 56.1
AUR62005576 Chenopodium quinoa HOM05D005632 ORTHO05D006870 3.1e-23 112.1 122 54.9
Sc11g0000640 Simmondsia chinensis HOM05D005632 ORTHO05D006870 1.5e-22 109.8 123 50.4
Ca_18063_v3 Cicer arietinum L. HOM05D005632 ORTHO05D006870 2.6e-22 109.0 124 54.8
Cpa.g.sc43.34 Carica papaya HOM05D005632 ORTHO05D006870 7.6e-22 107.5 123 56.9
Hma1.2p1_1340F.1_g276780 Hydrangea macrophylla HOM05D005632 ORTHO05D006870 1.7e-21 106.3 123 52.8
Manes.13G016200 Manihot esculenta HOM05D005632 ORTHO05D006870 1.7e-21 106.3 121 53.7
Actinidia30669 Actinidia chinensis HOM05D005632 ORTHO05D006870 2.9e-21 105.5 121 53.7
CSS0014265 Camellia sinensis var. sinensis HOM05D005632 ORTHO05D006870 2.9e-21 105.5 126 55.6
arahy.Tifrunner.gnm1.ann1.A0WBES Arachis hypogaea HOM05D005632 ORTHO05D006870 4.9e-21 104.8 121 52.9
PSO063G5034 Papaver somniferum HOM05D005632 ORTHO05D006870 4.9e-21 104.8 128 50.8
VMungo0251G3265 Vigna mungo HOM05D005632 ORTHO05D006870 4.9e-21 104.8 122 54.1
MBI11_g35371_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 6.4e-21 104.4 121 51.2
Lj4g0009016 Lotus japonicus HOM05D005632 ORTHO05D006870 8.4e-21 104.0 125 56.8
arahy.Tifrunner.gnm1.ann1.9W4XT6 Arachis hypogaea HOM05D005632 ORTHO05D006870 1.4e-20 103.2 121 52.9
Dinv10990 Davidia involucrata HOM05D005632 ORTHO05D006870 1.4e-20 103.2 121 53.7
Oeu042062.1 Olea europaea HOM05D005632 ORTHO05D006870 2.4e-20 102.4 124 51.6
TPR.G17101 Trifolium pratense HOM05D005632 ORTHO05D006870 2.4e-20 102.4 123 52.8
Migut.K00701 Erythranthe guttata HOM05D005632 ORTHO05D006870 5.4e-20 101.3 124 54.8
EL10Ac6g13443 Beta vulgaris HOM05D005632 ORTHO05D006870 7.1e-20 100.9 124 52.4
Psat7g079520 Pisum sativum HOM05D005632 ORTHO05D006870 9.3e-20 100.5 124 54.0
Glyma.05G145700 Glycine max HOM05D005632 ORTHO05D006870 6.0e-19 97.8 121 49.6
Hund06068 Selenicereus undatus HOM05D005632 ORTHO05D006870 1.0e-18 97.1 125 48.8
ECA233G1608 Erigeron canadensis HOM05D000084 ORTHO05D002602 1.3e-18 96.7 121 50.4
Nn3g16536 Nelumbo nucifera HOM05D005632 ORTHO05D006870 1.7e-18 96.3 121 52.1
Glyma.08G102500 Glycine max HOM05D005632 ORTHO05D006870 2.3e-18 95.9 124 51.6
Cc11_g16640 Coffea canephora HOM05D005632 ORTHO05D006870 3.0e-18 95.5 124 49.2
Nitab4.5_0007557g0010 Nicotiana tabacum HOM05D005632 ORTHO05D006870 3.9e-18 95.1 122 51.6
TWI18G1462 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 3.9e-18 95.1 121 50.4
HPP92_001245 Vanilla planifolia HOM05D005632 ORTHO05D006870 5.1e-18 94.7 122 50.8
MBI08_g36441_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 8.7e-18 94.0 121 51.2
Phvul.002G175800 Phaseolus vulgaris HOM05D005632 ORTHO05D006870 1.1e-17 93.6 121 52.9
Sed0020525 Sechium edule HOM05D005632 ORTHO05D006870 2.5e-17 92.4 121 48.8
ClCG08G017290 Citrullus lanatus HOM05D005632 ORTHO05D006870 3.3e-17 92.0 122 46.7
Peaxi162Scf00128g00929 Petunia axillaris HOM05D005632 ORTHO05D006870 4.3e-17 91.7 119 53.8
PGR102G1157 Punica granatum HOM05D005632 ORTHO05D006870 5.6e-17 91.3 121 51.2
TWI36G0420 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 5.6e-17 91.3 121 46.3
TWI36G0711 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 5.6e-17 91.3 121 46.3
Gohir.A05G311200 Gossypium hirsutum HOM05D005632 ORTHO05D006870 7.3e-17 90.9 115 49.6
Sopen05g009890 Solanum pennellii HOM05D005632 ORTHO05D006870 7.3e-17 90.9 123 49.6
PGSC0003DMG400017445 Solanum tuberosum HOM05D005632 ORTHO05D006870 7.3e-17 90.9 123 50.4
ECA234G0324 Erigeron canadensis HOM05D005632 ORTHO05D006870 9.6e-17 90.5 125 46.4
CAN.G947.28 Capsicum annuum HOM05D005632 ORTHO05D006870 1.3e-16 90.1 125 51.2
Duzib251G0024 Durio zibethinus HOM05D005632 ORTHO05D006870 2.8e-16 89.0 121 50.4
Sc14g0008990 Simmondsia chinensis HOM05D005632 ORTHO05D006870 3.6e-16 88.6 123 44.7
HPP92_001261 Vanilla planifolia HOM05D005632 ORTHO05D006870 3.6e-16 88.6 118 50.0
ATR0824G166 Amborella trichopoda HOM05D005632 ORTHO05D006870 4.8e-16 88.2 121 50.4
CsaV3_2G025340 Cucumis sativus L. HOM05D005632 ORTHO05D006870 8.1e-16 87.4 122 45.1
MSTRG.13321 Avicennia marina HOM05D005632 ORTHO05D006870 1.1e-15 87.0 125 48.8
MSTRG.522 Avicennia marina HOM05D005632 ORTHO05D006870 1.1e-15 87.0 122 47.5
GSVIVG01010338001 Vitis vinifera HOM05D000084 ORTHO05D002602 1.1e-15 87.0 121 44.6
DCAR_031183 Daucus carota HOM05D005632 ORTHO05D006870 1.8e-15 86.3 122 44.3
Nitab4.5_0000240g0120 Nicotiana tabacum HOM05D005632 ORTHO05D006870 9.0e-15 84.0 123 48.8
Lsat_1_v5_gn_4_2920 Lactuca sativa HOM05D005632 ORTHO05D006870 1.2e-14 83.6 123 48.0
MELO3C010730.2 Cucumis melo HOM05D005632 ORTHO05D006870 1.5e-14 83.2 122 43.4
HanXRQChr08g0207501 Helianthus annuus HOM05D005632 ORTHO05D006870 1.5e-14 83.2 121 48.8
SalBow2G0748 Salvia bowleyana HOM05D005632 ORTHO05D006870 1.5e-14 83.2 121 45.5
HanXRQChr12g0385931 Helianthus annuus HOM05D005632 ORTHO05D006870 2.0e-14 82.8 124 46.0
Gohir.D05G312000 Gossypium hirsutum HOM05D005632 ORTHO05D006870 9.9e-14 80.5 78 59.0
Gorai.009G333200 Gossypium raimondii HOM05D005632 ORTHO05D006870 1.3e-13 80.1 78 59.0
Lalb_Chr07g0187331 Lupinus albus HOM05D005632 ORTHO05D006870 1.7e-13 79.7 121 46.3
Oeu020312.1 Olea europaea HOM05D005632 ORTHO05D006870 1.4e-12 76.6 121 42.1
C06p42650 Brassica napus HOM05D005632 ORTHO05D006870 2.4e-12 75.9 121 41.3
BolC6t39174H Brassica oleracea HOM05D005632 ORTHO05D006870 2.4e-12 75.9 121 41.3
A07p34120 Brassica napus HOM05D005632 ORTHO05D006870 3.2e-12 75.5 121 42.1
BraA07t31038Z Brassica rapa HOM05D005632 ORTHO05D006870 3.2e-12 75.5 121 42.1
Lsat_1_v5_gn_8_149761 Lactuca sativa HOM05D005632 ORTHO05D006870 7.1e-12 74.3 121 43.8
MSTRG.11688 Avicennia marina HOM05D005632 ORTHO05D006870 2.7e-11 72.4 118 41.5
Zm00001eb182310 Zea mays HOM05D005632 ORTHO05D006870 6.0e-11 71.2 122 45.9
Migut.E00242 Erythranthe guttata HOM05D005632 ORTHO05D006870 1.0e-10 70.5 121 41.3
Lalb_Chr13g0294161 Lupinus albus HOM05D005632 ORTHO05D006870 1.0e-10 70.5 122 45.9
THA.LOC104807651 Tarenaya hassleriana HOM05D005632 ORTHO05D006870 3.0e-10 68.9 123 43.1
BcaB05g24299 Brassica carinata HOM05D005632 ORTHO05D006870 6.7e-10 67.8 121 39.7
CARHR060170 Cardamine hirsuta HOM05D005632 ORTHO05D006870 6.7e-10 67.8 122 39.3
AT1G67590 Arabidopsis thaliana HOM05D005632 ORTHO05D006870 8.7e-10 67.4 124 41.9
SEGI_29969 Sequoiadendron giganteum HOM05D002431 ORTHO05D002543 8.7e-10 67.4 142 38.0
Carub.0002s1393 Capsella rubella HOM05D005632 ORTHO05D006870 1.1e-09 67.0 122 39.3
BcaC03g14853 Brassica carinata HOM05D005632 ORTHO05D006870 1.5e-09 66.6 121 42.1
Thhalv10018804m.g Eutrema salsugineum HOM05D005632 ORTHO05D006870 1.9e-09 66.2 121 41.3
Aa31sc48G70 Aethionema arabicum HOM05D005632 ORTHO05D006870 3.3e-09 65.5 126 38.1
A02p14350 Brassica napus HOM05D005632 ORTHO05D006870 4.3e-09 65.1 124 38.7
BraA02t06496Z Brassica rapa HOM05D005632 ORTHO05D006870 4.3e-09 65.1 124 38.7
AL2G26260 Arabidopsis lyrata HOM05D005632 ORTHO05D006870 7.4e-09 64.3 124 40.3
BolC2t08463H Brassica oleracea HOM05D005632 ORTHO05D006870 7.4e-09 64.3 123 40.7
C02p23240 Brassica napus HOM05D005632 ORTHO05D006870 1.3e-08 63.5 121 38.8
Sp5g22610 Schrenkiella parvula HOM05D005632 ORTHO05D006870 1.3e-08 63.5 121 38.0
Lalb_Chr03g0039241 Lupinus albus HOM05D005632 ORTHO05D006870 2.8e-08 62.4 55 65.5
SGA_v2.0_scaffold87G27129 Striga asiatica HOM05D005632 ORTHO05D006870 2.4e-07 59.3 121 37.2
THA.LOC104824101 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 2.4e-07 59.3 134 40.3
Rhsim12G0029700 Rhododendron simsii HOM05D005632 ORTHO05D006870 6.9e-07 57.8 122 39.3
vmacro01082 Vaccinium macrocarpon HOM05D005632 ORTHO05D006870 1.5e-06 56.6 124 39.5
Psat7g086280 Pisum sativum HOM05D002431 ORTHO05D002543 2.6e-06 55.8 135 39.3
SMO146G0299 Selaginella moellendorffii HOM05D002431 ORTHO05D002543 3.4e-06 55.5 122 39.3
Sed0026720 Sechium edule HOM05D005632 ORTHO05D006870 4.5e-06 55.1 122 40.2


User provided reference genes

Program Settings