Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021019 Carpinus fangiana HOM05D002236 ORTHO05D043590 8.7e-38 159.8 82 100.0
Cfa005296 Carpinus fangiana HOM05D002236 ORTHO05D002341 1.6e-12 75.9 39 97.4
Haze_02091 Corylus avellana HOM05D002236 ORTHO05D002341 4.8e-12 74.3 39 92.3
CiPaw.05G086000 Carya illinoinensis HOM05D002236 ORTHO05D002341 4.0e-11 71.2 41 82.9
CiPaw.06G119800 Carya illinoinensis HOM05D002236 ORTHO05D002341 6.9e-11 70.5 39 89.7
Cpa.g.sc20.122 Carica papaya HOM05D002236 ORTHO05D002341 3.4e-10 68.2 39 84.6
Gohir.A04G132000 Gossypium hirsutum HOM05D002236 ORTHO05D002341 3.4e-10 68.2 38 86.8
Gohir.A12G036100 Gossypium hirsutum HOM05D002236 ORTHO05D002341 3.4e-10 68.2 38 86.8
Gohir.D04G168600 Gossypium hirsutum HOM05D002236 ORTHO05D002341 3.4e-10 68.2 38 86.8
Gorai.008G037700 Gossypium raimondii HOM05D002236 ORTHO05D002341 3.4e-10 68.2 38 86.8
Gorai.012G156900 Gossypium raimondii HOM05D002236 ORTHO05D002341 3.4e-10 68.2 38 86.8
Duzib248G0624 Durio zibethinus HOM05D002236 ORTHO05D002341 4.5e-10 67.8 38 86.8
COL.COLO4_36721 Corchorus olitorius HOM05D002236 ORTHO05D002341 7.6e-10 67.0 38 84.2
Gohir.D12G036500 Gossypium hirsutum HOM05D002236 ORTHO05D002341 7.6e-10 67.0 72 54.2
TAR628G1667 Trochodendron aralioides HOM05D002236 ORTHO05D002341 3.8e-09 64.7 39 79.5
Oeu028957.1 Olea europaea HOM05D002236 ORTHO05D043590 5.0e-09 64.3 40 72.5
Dinv41908 Davidia involucrata HOM05D002236 ORTHO05D002341 6.5e-09 63.9 37 78.4
Thecc.02G053900 Theobroma cacao HOM05D002236 ORTHO05D002341 6.5e-09 63.9 38 78.9
Cc09_g10380 Coffea canephora HOM05D002236 ORTHO05D002341 1.1e-08 63.2 39 76.9
Gohir.A01G171100 Gossypium hirsutum HOM05D002236 ORTHO05D002341 1.1e-08 63.2 38 78.9
Actinidia21481 Actinidia chinensis HOM05D002236 ORTHO05D002341 1.4e-08 62.8 39 76.9
TAR376G0644 Trochodendron aralioides HOM05D002236 ORTHO05D002341 3.2e-08 61.6 39 79.5
Duzib052G0063 Durio zibethinus HOM05D002236 ORTHO05D002341 4.2e-08 61.2 38 78.9
FAN15G2184 Fragaria x ananassa HOM05D002236 ORTHO05D002341 4.2e-08 61.2 39 71.8
FAN20G0297 Fragaria x ananassa HOM05D002236 ORTHO05D002341 4.2e-08 61.2 39 71.8
FAN27G1825 Fragaria x ananassa HOM05D002236 ORTHO05D002341 4.2e-08 61.2 39 71.8
FvH4_2g15750 Fragaria vesca HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 71.8
FAN24G0442 Fragaria x ananassa HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 71.8
Nitab4.5_0004557g0060 Nicotiana tabacum HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 76.9
Prupe.8G169900 Prunus persica HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 71.8
Rhsim05G0052400 Rhododendron simsii HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 71.8
RcHm_v2.0_Chr6g0279071 Rosa chinensis HOM05D002236 ORTHO05D002341 7.1e-08 60.5 39 71.8
MD05G1126500 Malus domestica HOM05D002236 ORTHO05D002341 9.3e-08 60.1 39 74.4
Sabra09G0107700 Salix brachista HOM05D002236 ORTHO05D002341 9.3e-08 60.1 39 71.8
Nitab4.5_0004867g0110 Nicotiana tabacum HOM05D002236 ORTHO05D002341 1.2e-07 59.7 39 76.9
Sabra04G0120300 Salix brachista HOM05D002236 ORTHO05D002341 1.2e-07 59.7 41 65.9
Manes.04G070200 Manihot esculenta HOM05D002236 ORTHO05D002341 2.1e-07 58.9 39 74.4
Peaxi162Scf00362g00434 Petunia axillaris HOM05D002236 ORTHO05D002341 2.1e-07 58.9 39 69.2
Sopen01g053900 Solanum pennellii HOM05D002236 ORTHO05D002341 2.1e-07 58.9 39 71.8
PGSC0003DMG400018642 Solanum tuberosum HOM05D002236 ORTHO05D002341 2.1e-07 58.9 39 71.8
Manes.11G098100 Manihot esculenta HOM05D002236 ORTHO05D002341 2.7e-07 58.5 39 76.9
TWI79G1766 Tripterygium wilfordii HOM05D002236 ORTHO05D002341 3.5e-07 58.2 38 71.1
QL11p052516 Quercus lobata HOM05D002236 ORTHO05D002341 4.6e-07 57.8 36 72.2
vmacro17330 Vaccinium macrocarpon HOM05D002236 ORTHO05D002341 4.6e-07 57.8 37 73.0
Rhsim11G0194100 Rhododendron simsii HOM05D002236 ORTHO05D002341 6.1e-07 57.4 37 70.3
CANSAT25G3144 Cannabis sativa HOM05D002236 ORTHO05D002341 7.9e-07 57.0 39 66.7
Ciclev10028158m.g Citrus clementina HOM05D002236 ORTHO05D002341 7.9e-07 57.0 38 76.3
Gohir.A03G206300 Gossypium hirsutum HOM05D002236 ORTHO05D002341 7.9e-07 57.0 38 71.1
Gohir.D02G227700 Gossypium hirsutum HOM05D002236 ORTHO05D002341 7.9e-07 57.0 38 71.1
Potri.004G178700 Populus trichocarpa HOM05D002236 ORTHO05D002341 7.9e-07 57.0 39 66.7
SalBow1G8665 Salvia bowleyana HOM05D002236 ORTHO05D002341 7.9e-07 57.0 37 70.3
Ah.01g023330 Amaranthus hybridus HOM05D002236 ORTHO05D002341 1.3e-06 56.2 37 75.7
Migut.B00047 Erythranthe guttata HOM05D002236 ORTHO05D002341 1.3e-06 56.2 39 64.1
Sc18g0006220 Simmondsia chinensis HOM05D002236 ORTHO05D002341 1.3e-06 56.2 37 73.0
vmacro02295 Vaccinium macrocarpon HOM05D002236 ORTHO05D002341 1.3e-06 56.2 39 66.7
MSTRG.27629 Avicennia marina HOM05D002236 ORTHO05D002341 2.3e-06 55.5 36 69.4
AUR62010003 Chenopodium quinoa HOM05D002236 ORTHO05D002341 2.3e-06 55.5 35 71.4
ClCG02G003870 Citrullus lanatus HOM05D002236 ORTHO05D002341 3.0e-06 55.1 40 72.5
MELO3C013326.2 Cucumis melo HOM05D002236 ORTHO05D002341 3.0e-06 55.1 40 72.5
CsaV3_7G001260 Cucumis sativus L. HOM05D002236 ORTHO05D002341 3.0e-06 55.1 40 72.5
Lalb_Chr02g0143541 Lupinus albus HOM05D002236 ORTHO05D002341 3.0e-06 55.1 39 66.7
Potri.009G139000 Populus trichocarpa HOM05D002236 ORTHO05D002341 3.0e-06 55.1 39 69.2
TWI75G0200 Tripterygium wilfordii HOM05D002236 ORTHO05D002341 3.0e-06 55.1 38 73.7
MSTRG.19968 Avicennia marina HOM05D002236 ORTHO05D002341 3.9e-06 54.7 37 67.6
Hma1.2p1_0163F.1_g072800 Hydrangea macrophylla HOM05D002236 ORTHO05D002341 5.1e-06 54.3 40 65.0
CSS0007742 Camellia sinensis var. sinensis HOM05D002236 ORTHO05D002341 6.7e-06 53.9 39 66.7
Ah.01g008120 Amaranthus hybridus HOM05D002236 ORTHO05D002341 8.7e-06 53.5 36 66.7
Hund06452 Selenicereus undatus HOM05D002236 ORTHO05D002341 8.7e-06 53.5 37 70.3


User provided reference genes

Program Settings