Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020991 Carpinus fangiana HOM05D000181 ORTHO05D019414 2.6e-59 231.9 119 100.0
Cfa013057 Carpinus fangiana HOM05D000181 ORTHO05D019414 2.3e-47 192.2 98 99.0
Cfa011524 Carpinus fangiana HOM05D000181 ORTHO05D003134 2.2e-42 175.6 104 89.4
Haze_24129 Corylus avellana HOM05D000181 ORTHO05D003134 2.4e-41 172.2 104 87.5
QL01p030988 Quercus lobata HOM05D000181 ORTHO05D003134 9.0e-28 127.1 103 69.9
Dinv06262 Davidia involucrata HOM05D000181 ORTHO05D003134 2.3e-23 112.5 104 58.7
CiPaw.13G091400 Carya illinoinensis HOM05D000181 ORTHO05D003134 5.1e-23 111.3 105 64.8
Lj2A1066T67 Lonicera japonica HOM05D000181 ORTHO05D003134 7.4e-22 107.5 104 57.7
TAR369G0431 Trochodendron aralioides HOM05D000181 ORTHO05D003134 1.6e-21 106.3 106 59.4
GSVIVG01024927001 Vitis vinifera HOM05D000181 ORTHO05D003134 2.8e-21 105.5 106 55.7
CSS0008560 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 1.8e-20 102.8 104 52.9
Eucgr.B02325 Eucalyptus grandis HOM05D000181 ORTHO05D003134 3.4e-19 98.6 99 57.6
Gohir.A05G094200 Gossypium hirsutum HOM05D000181 ORTHO05D003134 3.4e-19 98.6 103 55.3
ClCG02G020010 Citrullus lanatus HOM05D000181 ORTHO05D003134 5.9e-19 97.8 104 53.8
Prupe.6G072600 Prunus persica HOM05D000181 ORTHO05D003134 5.9e-19 97.8 105 53.3
Eucgr.B02323 Eucalyptus grandis HOM05D000181 ORTHO05D003134 1.3e-18 96.7 99 56.6
Gorai.009G097900 Gossypium raimondii HOM05D000181 ORTHO05D003134 1.3e-18 96.7 103 54.4
TWI79G0215 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 1.3e-18 96.7 104 51.0
Duzib150G0241 Durio zibethinus HOM05D000181 ORTHO05D003134 3.8e-18 95.1 99 55.6
Gohir.D05G094700 Gossypium hirsutum HOM05D000181 ORTHO05D003134 3.8e-18 95.1 103 55.3
Hma1.2p1_0757F.1_g213270 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 3.8e-18 95.1 100 55.0
Thecc.09G318500 Theobroma cacao HOM05D000181 ORTHO05D003134 3.8e-18 95.1 98 57.1
Manes.01G171200 Manihot esculenta HOM05D000181 ORTHO05D003134 5.0e-18 94.7 103 53.4
Rhsim01G0230600 Rhododendron simsii HOM05D000181 ORTHO05D003134 5.0e-18 94.7 105 52.4
Actinidia23925 Actinidia chinensis HOM05D000181 ORTHO05D003134 6.5e-18 94.4 105 54.3
CSS0020099 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 6.5e-18 94.4 105 52.4
CSS0033381 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 6.5e-18 94.4 105 52.4
TAR623G0999 Trochodendron aralioides HOM05D000181 ORTHO05D019414 6.5e-18 94.4 80 63.8
AUR62001758 Chenopodium quinoa HOM05D000181 ORTHO05D003134 8.5e-18 94.0 104 53.8
Actinidia34421 Actinidia chinensis HOM05D000181 ORTHO05D003134 1.1e-17 93.6 100 58.0
AUR62009544 Chenopodium quinoa HOM05D000181 ORTHO05D003134 1.1e-17 93.6 104 53.8
TWI31G1224 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 1.1e-17 93.6 104 48.1
Hund04937 Selenicereus undatus HOM05D000181 ORTHO05D003134 1.9e-17 92.8 104 53.8
Sed0016908 Sechium edule HOM05D000181 ORTHO05D003134 3.2e-17 92.0 99 52.5
RcHm_v2.0_Chr5g0065851 Rosa chinensis HOM05D000181 ORTHO05D003134 4.2e-17 91.7 105 52.4
Hma1.2p1_0615F.1_g189800 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 5.5e-17 91.3 99 53.5
MD03G1088300 Malus domestica HOM05D000181 ORTHO05D003134 5.5e-17 91.3 105 51.4
CiPaw.10G146600 Carya illinoinensis HOM05D000181 ORTHO05D003134 7.2e-17 90.9 97 50.5
Sed0026085 Sechium edule HOM05D000181 ORTHO05D003134 7.2e-17 90.9 104 50.0
CANSAT54G0527 Cannabis sativa HOM05D000181 ORTHO05D003134 9.4e-17 90.5 106 49.1
Cpa.g.sc81.117 Carica papaya HOM05D000181 ORTHO05D003134 9.4e-17 90.5 106 51.9
CiPaw.14G067300 Carya illinoinensis HOM05D000181 ORTHO05D003134 9.4e-17 90.5 107 53.3
MELO3C025899.2 Cucumis melo HOM05D000181 ORTHO05D003134 1.6e-16 89.7 104 48.1
CsaV3_6G016700 Cucumis sativus L. HOM05D000181 ORTHO05D003134 2.1e-16 89.4 104 48.1
Cc01_g13140 Coffea canephora HOM05D000181 ORTHO05D003134 2.7e-16 89.0 106 50.9
vmacro03045 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 3.6e-16 88.6 99 49.5
Duzib168G1631 Durio zibethinus HOM05D000181 ORTHO05D003134 4.6e-16 88.2 103 53.4
Eucgr.B02324 Eucalyptus grandis HOM05D000181 ORTHO05D003134 4.6e-16 88.2 103 51.5
Nn2g11151 Nelumbo nucifera HOM05D000181 ORTHO05D003134 7.9e-16 87.4 104 51.0
PGR102G0952 Punica granatum HOM05D000181 ORTHO05D003134 1.4e-15 86.7 103 47.6
Ah.08g219760 Amaranthus hybridus HOM05D000181 ORTHO05D003134 2.3e-15 85.9 104 51.9
MSTRG.17825 Avicennia marina HOM05D000181 ORTHO05D003134 2.3e-15 85.9 107 45.8
vmacro14548 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 3.9e-15 85.1 104 47.1
MD11G1097400 Malus domestica HOM05D000181 ORTHO05D003134 5.1e-15 84.7 105 50.5
FvH4_3g36790 Fragaria vesca HOM05D000181 ORTHO05D003134 1.1e-14 83.6 105 50.5
FAN11G3739 Fragaria x ananassa HOM05D000181 ORTHO05D003134 1.1e-14 83.6 105 50.5
FAN21G0607 Fragaria x ananassa HOM05D000181 ORTHO05D003134 1.1e-14 83.6 104 51.0
Atru.chr3.3973 Acer truncatum HOM05D000181 ORTHO05D003134 1.5e-14 83.2 99 52.5
THA.LOC104815783 Tarenaya hassleriana HOM05D000181 ORTHO05D003134 1.5e-14 83.2 99 47.5
AL1G17690 Arabidopsis lyrata HOM05D000181 ORTHO05D003134 2.0e-14 82.8 100 51.0
EL10Ac7g16046 Beta vulgaris HOM05D000181 ORTHO05D003134 2.5e-14 82.4 104 50.0
Carub.0001s0683 Capsella rubella HOM05D000181 ORTHO05D003134 3.3e-14 82.0 100 52.0
Ciclev10027837m.g Citrus clementina HOM05D000181 ORTHO05D003134 4.3e-14 81.6 100 51.0
FAN16G3230 Fragaria x ananassa HOM05D000181 ORTHO05D003134 4.3e-14 81.6 105 49.5
Ah.15g097760 Amaranthus hybridus HOM05D000181 ORTHO05D003134 9.7e-14 80.5 104 48.1
AT1G07510 Arabidopsis thaliana HOM05D000181 ORTHO05D003134 1.3e-13 80.1 100 49.0
FAN25G3587 Fragaria x ananassa HOM05D000181 ORTHO05D003134 1.3e-13 80.1 105 49.5
Lsat_1_v5_gn_9_23940 Lactuca sativa HOM05D000181 ORTHO05D003134 1.3e-13 80.1 103 45.6
Nn2g13391 Nelumbo nucifera HOM05D000181 ORTHO05D003134 1.3e-13 80.1 107 50.5
QL07p048749 Quercus lobata HOM05D000181 ORTHO05D003134 1.3e-13 80.1 100 45.0
Haze_20778 Corylus avellana HOM05D000181 ORTHO05D019414 2.8e-13 79.0 103 43.7
Carub.0004s1008 Capsella rubella HOM05D000181 ORTHO05D003134 6.3e-13 77.8 100 48.0
Sp1g06240 Schrenkiella parvula HOM05D000181 ORTHO05D003134 6.3e-13 77.8 100 50.0
Aa31LG5G7170 Aethionema arabicum HOM05D000181 ORTHO05D003134 8.2e-13 77.4 99 45.5
MBI14_g12126_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D003134 8.2e-13 77.4 108 51.9
THA.LOC104800676 Tarenaya hassleriana HOM05D000181 ORTHO05D003134 8.2e-13 77.4 99 45.5
CARHR007280 Cardamine hirsuta HOM05D000181 ORTHO05D003134 1.1e-12 77.0 100 49.0
Dinv37160 Davidia involucrata HOM05D000181 ORTHO05D003134 1.1e-12 77.0 101 44.6
MBI05_g28373_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D003134 1.1e-12 77.0 108 53.7
SalBow2G2909 Salvia bowleyana HOM05D000181 ORTHO05D003134 1.1e-12 77.0 103 40.8
DCAR_007438 Daucus carota HOM05D000181 ORTHO05D003134 2.4e-12 75.9 105 48.6
PSO339G6640 Papaver somniferum HOM05D000181 ORTHO05D003134 3.1e-12 75.5 103 47.6
Thecc.05G037300 Theobroma cacao HOM05D000181 ORTHO05D003134 9.1e-12 73.9 97 46.4
Aqoxy1G00907 Aquilegia oxysepala HOM05D000181 ORTHO05D003134 1.5e-11 73.2 108 43.5
Potri.009G033600 Populus trichocarpa HOM05D000181 ORTHO05D003134 2.0e-11 72.8 106 48.1
AL4G23650 Arabidopsis lyrata HOM05D000181 ORTHO05D003134 2.6e-11 72.4 100 44.0
Sabra09G0024000 Salix brachista HOM05D000181 ORTHO05D003134 2.6e-11 72.4 103 46.6
Haze_20815 Corylus avellana HOM05D000181 ORTHO05D003134 3.4e-11 72.0 101 42.6
Duzib106G1009 Durio zibethinus HOM05D000181 ORTHO05D003134 7.7e-11 70.9 98 45.9
MELO3C003139.2 Cucumis melo HOM05D000181 ORTHO05D003134 1.0e-10 70.5 105 43.8
Duzib093G1630 Durio zibethinus HOM05D000181 ORTHO05D003134 1.0e-10 70.5 99 45.5
Nitab4.5_0000705g0160 Nicotiana tabacum HOM05D000181 ORTHO05D003134 1.0e-10 70.5 102 45.1
PSO063G1802 Papaver somniferum HOM05D000181 ORTHO05D003134 1.0e-10 70.5 103 46.6
Nitab4.5_0000527g0220 Nicotiana tabacum HOM05D000181 ORTHO05D003134 2.2e-10 69.3 99 47.5
CSS0038960 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 2.9e-10 68.9 103 44.7
CsaV3_4G025100 Cucumis sativus L. HOM05D000181 ORTHO05D003134 2.9e-10 68.9 105 45.7
Nitab4.5_0009302g0010 Nicotiana tabacum HOM05D000181 ORTHO05D003134 2.9e-10 68.9 98 46.9
Psat7g209680 Pisum sativum HOM05D000181 ORTHO05D003134 2.9e-10 68.9 105 47.6
Thhalv10016261m.g Eutrema salsugineum HOM05D000181 ORTHO05D003134 3.8e-10 68.6 98 43.9
Nitab4.5_0014770g0010 Nicotiana tabacum HOM05D000181 ORTHO05D003134 3.8e-10 68.6 99 46.5
AT2G29080 Arabidopsis thaliana HOM05D000181 ORTHO05D003134 6.5e-10 67.8 100 45.0
CARHR122360 Cardamine hirsuta HOM05D000181 ORTHO05D003134 6.5e-10 67.8 98 43.9
TPR.G23594 Trifolium pratense HOM05D000181 ORTHO05D003134 8.5e-10 67.4 105 44.8
Thhalv10006814m.g Eutrema salsugineum HOM05D000181 ORTHO05D003134 1.1e-09 67.0 101 45.5
Gorai.002G257200 Gossypium raimondii HOM05D000181 ORTHO05D003134 1.4e-09 66.6 99 41.4
Gohir.A01G221800 Gossypium hirsutum HOM05D000181 ORTHO05D003134 1.9e-09 66.2 99 39.4
Prupe.6G257400 Prunus persica HOM05D000181 ORTHO05D003134 1.9e-09 66.2 102 45.1
PGSC0003DMG400008828 Solanum tuberosum HOM05D000181 ORTHO05D003134 1.9e-09 66.2 99 40.4
BcaB06g28273 Brassica carinata HOM05D000181 ORTHO05D003134 2.5e-09 65.9 101 47.5
FAN05G5381 Fragaria x ananassa HOM05D000181 ORTHO05D003134 2.5e-09 65.9 101 49.5
Gohir.D01G211400 Gossypium hirsutum HOM05D000181 ORTHO05D003134 2.5e-09 65.9 99 41.4
Sc21g0005930 Simmondsia chinensis HOM05D000181 ORTHO05D003134 2.5e-09 65.9 98 40.8
FAN02G2965 Fragaria x ananassa HOM05D000181 ORTHO05D003134 4.2e-09 65.1 101 48.5
FAN09G3297 Fragaria x ananassa HOM05D000181 ORTHO05D003134 4.2e-09 65.1 101 48.5
RcHm_v2.0_Chr3g0466351 Rosa chinensis HOM05D000181 ORTHO05D003134 4.2e-09 65.1 101 46.5
Atru.chr8.1994 Acer truncatum HOM05D000181 ORTHO05D019414 7.2e-09 64.3 71 52.1
CDE08G0036 Ceratophyllum demersum HOM05D000181 ORTHO05D003134 7.2e-09 64.3 103 38.8
FAN14G1238 Fragaria x ananassa HOM05D000181 ORTHO05D003134 7.2e-09 64.3 101 48.5
Glyma.12G061200 Glycine max HOM05D000181 ORTHO05D003134 7.2e-09 64.3 106 43.4
BcaC07g41994 Brassica carinata HOM05D000181 ORTHO05D003134 9.4e-09 63.9 100 45.0
A04p22090 Brassica napus HOM05D000181 ORTHO05D003134 9.4e-09 63.9 98 45.9
C08p50540 Brassica napus HOM05D000181 ORTHO05D003134 9.4e-09 63.9 100 45.0
BolC4t27347H Brassica oleracea HOM05D000181 ORTHO05D003134 9.4e-09 63.9 99 47.5
BolC8t52581H Brassica oleracea HOM05D000181 ORTHO05D003134 9.4e-09 63.9 100 45.0
BraA04t17773Z Brassica rapa HOM05D000181 ORTHO05D003134 9.4e-09 63.9 98 45.9
FvH4_6g13480 Fragaria vesca HOM05D000181 ORTHO05D003134 9.4e-09 63.9 101 47.5
Lalb_Chr19g0137901 Lupinus albus HOM05D000181 ORTHO05D003134 9.4e-09 63.9 103 43.7
Rhsim04G0158400 Rhododendron simsii HOM05D000181 ORTHO05D003134 9.4e-09 63.9 102 42.2
HanXRQChr12g0374231 Helianthus annuus HOM05D000181 ORTHO05D003134 1.2e-08 63.5 112 40.2
Lj3g0008176 Lotus japonicus HOM05D000181 ORTHO05D003134 1.6e-08 63.2 106 45.3
Glyma.11G137700 Glycine max HOM05D000181 ORTHO05D003134 2.1e-08 62.8 106 44.3
C04p58190 Brassica napus HOM05D000181 ORTHO05D003134 2.7e-08 62.4 99 47.5
Ca_19157_v3 Cicer arietinum L. HOM05D000181 ORTHO05D003134 2.7e-08 62.4 106 44.3
Migut.J00319 Erythranthe guttata HOM05D000181 ORTHO05D003134 3.6e-08 62.0 105 42.9
MD12G1144000 Malus domestica HOM05D000181 ORTHO05D019414 3.6e-08 62.0 102 40.2
MD04G1130900 Malus domestica HOM05D000181 ORTHO05D003134 7.9e-08 60.8 101 37.6
Potri.016G099800 Populus trichocarpa HOM05D000181 ORTHO05D003134 7.9e-08 60.8 103 42.7
Lalb_Chr01g0003541 Lupinus albus HOM05D000181 ORTHO05D003134 1.0e-07 60.5 103 42.7
Lalb_Chr01g0003561 Lupinus albus HOM05D000181 ORTHO05D003134 1.0e-07 60.5 105 46.7
MSTRG.5654 Avicennia marina HOM05D000181 ORTHO05D003134 1.4e-07 60.1 54 57.4
BcaB02g10230 Brassica carinata HOM05D000181 ORTHO05D003134 1.4e-07 60.1 99 45.5
Phvul.011G062800 Phaseolus vulgaris HOM05D000181 ORTHO05D003134 1.4e-07 60.1 105 42.9
BcaC07g42473 Brassica carinata HOM05D000181 ORTHO05D003134 1.8e-07 59.7 100 45.0
A09p66370 Brassica napus HOM05D000181 ORTHO05D003134 2.3e-07 59.3 101 46.5
Glyma.12G061500 Glycine max HOM05D000181 ORTHO05D213349 2.3e-07 59.3 103 41.7
COL.COLO4_14779 Corchorus olitorius HOM05D000181 ORTHO05D003134 3.9e-07 58.5 66 50.0
Glyma.12G061400 Glycine max HOM05D000181 ORTHO05D003134 3.9e-07 58.5 106 41.5
Gohir.D09G150500 Gossypium hirsutum HOM05D000181 ORTHO05D003134 3.9e-07 58.5 100 43.0
Phvul.011G162000 Phaseolus vulgaris HOM05D000181 ORTHO05D003134 5.1e-07 58.2 107 43.0
VMungo1127G1333 Vigna mungo HOM05D000181 ORTHO05D003134 5.1e-07 58.2 105 41.9
BraA07t29655Z Brassica rapa HOM05D000181 ORTHO05D003134 6.7e-07 57.8 101 42.6
MD03G1088400 Malus domestica HOM05D000181 ORTHO05D003134 6.7e-07 57.8 72 51.4
Oeu001862.1 Olea europaea HOM05D000181 ORTHO05D003134 6.7e-07 57.8 55 50.9
Oeu053094.1 Olea europaea HOM05D000181 ORTHO05D019414 6.7e-07 57.8 100 37.0
Sabra16G0101000 Salix brachista HOM05D000181 ORTHO05D003134 6.7e-07 57.8 103 42.7
Sopen10g035930 Solanum pennellii HOM05D000181 ORTHO05D003134 6.7e-07 57.8 106 40.6
Actinidia13153 Actinidia chinensis HOM05D000181 ORTHO05D003134 8.8e-07 57.4 104 37.5
Gorai.006G171800 Gossypium raimondii HOM05D000181 ORTHO05D003134 8.8e-07 57.4 98 41.8
Medtr4g064350 Medicago truncatula HOM05D000181 ORTHO05D003134 8.8e-07 57.4 105 40.0
vmacro08645 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 8.8e-07 57.4 75 48.0
A07p19490 Brassica napus HOM05D000181 ORTHO05D003134 1.1e-06 57.0 101 42.6
Solyc10g086550.2 Solanum lycopersicum HOM05D000181 ORTHO05D003134 1.5e-06 56.6 58 51.7
BraA09t41974Z Brassica rapa HOM05D000181 ORTHO05D003134 2.0e-06 56.2 100 44.0
ClCG04G008090 Citrullus lanatus HOM05D000181 ORTHO05D003134 2.0e-06 56.2 93 39.8
BcaC02g11043 Brassica carinata HOM05D000181 ORTHO05D003134 2.6e-06 55.8 99 45.5
C04p21870 Brassica napus HOM05D000181 ORTHO05D003134 5.7e-06 54.7 99 44.4
BolC4t23706H Brassica oleracea HOM05D000181 ORTHO05D003134 5.7e-06 54.7 99 44.4
Lalb_Chr03g0026511 Lupinus albus HOM05D000181 ORTHO05D003134 7.4e-06 54.3 102 42.2
VMungo1127G0746 Vigna mungo HOM05D012227 ORTHO05D000062 7.4e-06 54.3 89 43.8
Solyc09g010950.3 Solanum lycopersicum HOM05D000181 ORTHO05D003134 9.7e-06 53.9 99 37.4
Sopen09g005670 Solanum pennellii HOM05D000181 ORTHO05D003134 9.7e-06 53.9 99 37.4


User provided reference genes

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