Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 2.5e-75 285.4 150 100.0
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 4.9e-63 244.6 130 91.5
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 2.7e-61 238.8 151 83.4
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.5e-59 233.0 131 87.0
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 3.3e-59 231.9 151 81.5
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 3.3e-59 231.9 147 80.3
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 5.6e-59 231.1 126 87.3
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 9.5e-59 230.3 150 74.7
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 1.6e-58 229.6 148 81.8
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 2.8e-58 228.8 149 82.6
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 6.2e-58 227.6 148 79.7
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 8.1e-58 227.3 130 83.8
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.8e-57 226.1 130 83.1
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.8e-57 226.1 130 83.1
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 4.0e-57 224.9 148 76.4
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 4.0e-57 224.9 131 84.0
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 6.8e-57 224.2 131 84.0
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 1.5e-56 223.0 127 84.3
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 2.0e-56 222.6 127 82.7
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 2.6e-56 222.2 149 80.5
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 2.6e-56 222.2 126 84.1
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 3.4e-56 221.9 150 77.3
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 9.9e-56 220.3 138 84.1
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 1.3e-55 219.9 131 81.7
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 4.9e-55 218.0 133 82.0
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 6.4e-55 217.6 122 82.0
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 2.4e-54 215.7 126 81.0
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 3.2e-54 215.3 152 73.7
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 4.1e-54 214.9 117 87.2
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 9.2e-54 213.8 126 81.0
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.5e-53 211.8 126 80.2
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 7.8e-53 210.7 147 75.5
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 1.3e-52 209.9 151 74.8
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.3e-52 209.9 154 71.4
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 1.3e-52 209.9 125 80.0
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 2.3e-52 209.1 119 84.0
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.9e-52 208.4 154 70.8
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.9e-52 208.4 156 72.4
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 3.9e-52 208.4 150 76.7
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 3.9e-52 208.4 117 82.9
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 6.6e-52 207.6 151 76.8
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 1.1e-51 206.8 141 72.3
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 1.1e-51 206.8 118 83.1
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.5e-51 206.5 118 82.2
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 1.5e-51 206.5 118 82.2
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 3.3e-51 205.3 126 77.0
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.6e-50 203.0 130 72.3
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 2.1e-50 202.6 129 76.0
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 2.1e-50 202.6 148 73.0
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 2.1e-50 202.6 119 80.7
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.8e-50 202.2 147 69.4
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 3.6e-50 201.8 117 81.2
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 4.7e-50 201.4 151 72.8
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 4.7e-50 201.4 144 74.3
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 1.1e-49 200.3 144 74.3
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.1e-49 200.3 117 81.2
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.8e-49 199.5 147 72.1
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 4.0e-49 198.4 144 72.9
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 1.5e-48 196.4 148 67.6
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 7.6e-48 194.1 131 73.3
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.3e-47 193.4 173 59.5
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 2.2e-47 192.6 144 73.6
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 2.9e-47 192.2 147 69.4
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 3.8e-47 191.8 113 76.1
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.8e-47 191.8 129 72.1
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 6.4e-47 191.0 130 70.8
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 8.4e-47 190.7 147 70.1
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 8.4e-47 190.7 147 69.4
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 2.4e-46 189.1 130 70.0
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 2.4e-46 189.1 147 70.1
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 2.4e-46 189.1 149 65.8
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 3.2e-46 188.7 147 71.4
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 3.2e-46 188.7 100 88.0
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 4.2e-46 188.3 130 69.2
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 4.2e-46 188.3 144 71.5
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 4.2e-46 188.3 130 70.8
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 5.4e-46 188.0 147 66.7
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 5.4e-46 188.0 147 68.7
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 7.1e-46 187.6 131 70.2
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 9.3e-46 187.2 130 69.2
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 9.3e-46 187.2 130 69.2
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 9.3e-46 187.2 130 69.2
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 9.3e-46 187.2 130 69.2
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.2e-45 186.8 130 68.5
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 1.6e-45 186.4 131 71.8
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 1.6e-45 186.4 131 71.8
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 2.7e-45 185.7 130 68.5
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 3.5e-45 185.3 130 68.5
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 3.5e-45 185.3 130 69.2
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 3.5e-45 185.3 127 70.9
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 3.5e-45 185.3 119 75.6
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 3.5e-45 185.3 147 69.4
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 4.6e-45 184.9 111 80.2
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.0e-44 183.7 133 69.9
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.7e-44 183.0 144 70.8
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 3.0e-44 182.2 130 67.7
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 3.9e-44 181.8 131 67.2
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 5.1e-44 181.4 110 80.0
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 8.7e-44 180.6 131 67.2
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 1.5e-43 179.9 130 66.9
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 1.9e-43 179.5 131 66.4
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 3.3e-43 178.7 130 69.2
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 1.3e-42 176.8 116 68.1
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 2.8e-42 175.6 160 58.8
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 6.2e-42 174.5 99 79.8
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 2.4e-41 172.6 122 67.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.1e-41 172.2 129 63.6
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 5.8e-40 167.9 131 64.1
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 9.9e-40 167.2 121 66.1
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.8e-39 165.2 156 62.2
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 4.9e-39 164.9 122 64.8
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 5.4e-38 161.4 87 87.4
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 7.9e-37 157.5 84 88.1
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 1.8e-36 156.4 125 63.2
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 1.3e-31 140.2 107 62.6
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.3e-28 130.2 78 73.1
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 5.6e-27 124.8 101 55.4
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 3.7e-26 122.1 101 52.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 5.3e-25 118.2 61 90.2
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 1.2e-24 117.1 101 51.5
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 3.8e-23 112.1 101 50.5
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 8.4e-23 110.9 91 61.5
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 9.3e-22 107.5 98 53.1
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.2e-21 107.1 69 73.9
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.6e-21 106.7 61 78.7
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 7.9e-21 104.4 61 78.7
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.9e-20 102.1 95 64.2
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 9.7e-19 97.4 61 73.8
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 1.3e-18 97.1 84 69.0
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 6.3e-18 94.7 67 67.2
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.2e-16 90.5 85 51.8
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 7.6e-16 87.8 57 70.2
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.6e-13 80.1 49 75.5
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.2e-10 69.7 48 62.5
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 3.1e-09 65.9 34 85.3
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 4.1e-09 65.5 98 31.6
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 5.3e-09 65.1 96 34.4
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 5.3e-09 65.1 64 54.7


User provided reference genes

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