Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020855 Carpinus fangiana HOM05D000175 ORTHO05D001341 9.8e-58 226.5 107 100.0
Cfa008607 Carpinus fangiana HOM05D000175 ORTHO05D001341 4.1e-56 221.1 107 98.1
Haze_11007 Corylus avellana HOM05D000175 ORTHO05D001341 7.0e-56 220.3 108 97.2
CiPaw.05G249500 Carya illinoinensis HOM05D000175 ORTHO05D001341 4.9e-41 171.0 107 76.6
QL01p001757 Quercus lobata HOM05D000175 ORTHO05D001341 2.7e-39 165.2 106 74.5
Prupe.1G324300 Prunus persica HOM05D000175 ORTHO05D001341 2.6e-26 122.1 98 64.3
Gohir.D02G144900 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.4e-24 116.3 104 54.8
Gorai.005G162300 Gossypium raimondii HOM05D000175 ORTHO05D001341 1.4e-24 116.3 104 54.8
Lj4g0025251 Lotus japonicus HOM05D000175 ORTHO05D001341 3.2e-24 115.2 109 56.0
GSVIVG01011760001 Vitis vinifera HOM05D000175 ORTHO05D001341 5.4e-24 114.4 95 61.1
Glyma.20G013600 Glycine max HOM05D000175 ORTHO05D001341 7.1e-24 114.0 102 58.8
Potri.010G113400 Populus trichocarpa HOM05D000175 ORTHO05D001341 9.3e-24 113.6 101 56.4
Phvul.002G093000 Phaseolus vulgaris HOM05D000175 ORTHO05D001341 1.6e-23 112.8 102 55.9
Glyma.07G216700 Glycine max HOM05D000175 ORTHO05D001341 3.5e-23 111.7 102 57.8
Thecc.02G281300 Theobroma cacao HOM05D000175 ORTHO05D001341 4.6e-23 111.3 104 54.8
CSS0028558 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D001341 6.0e-23 110.9 127 51.2
Ciclev10016883m.g Citrus clementina HOM05D000175 ORTHO05D001341 6.0e-23 110.9 109 52.3
FAN07G2498 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.8e-22 109.4 106 57.5
FAN22G0562 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.8e-22 109.4 106 57.5
COL.COLO4_20479 Corchorus olitorius HOM05D000175 ORTHO05D001341 3.9e-22 108.2 99 53.5
Duzib251G0635 Durio zibethinus HOM05D000175 ORTHO05D001341 5.1e-22 107.8 108 54.6
Lalb_Chr05g0219421 Lupinus albus HOM05D000175 ORTHO05D001341 5.1e-22 107.8 108 53.7
AUR62038512 Chenopodium quinoa HOM05D000175 ORTHO05D001341 8.7e-22 107.1 107 51.4
MD13G1025600 Malus domestica HOM05D000175 ORTHO05D001341 1.1e-21 106.7 108 58.3
FvH4_4g32391 Fragaria vesca HOM05D000175 ORTHO05D001341 1.5e-21 106.3 106 56.6
FAN12G1310 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.5e-21 106.3 106 56.6
Dinv07643 Davidia involucrata HOM05D000175 ORTHO05D001341 3.3e-21 105.1 107 54.2
Peaxi162Scf00159g00048 Petunia axillaris HOM05D000175 ORTHO05D001341 3.3e-21 105.1 123 47.2
VMungo0251G3451 Vigna mungo HOM05D000175 ORTHO05D001341 4.3e-21 104.8 102 52.0
MBI10_g08544_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D001341 1.3e-20 103.2 110 54.5
arahy.Tifrunner.gnm1.ann1.IRIV1V Arachis hypogaea HOM05D000175 ORTHO05D001341 6.2e-20 100.9 97 54.6
FAN17G2001 Fragaria x ananassa HOM05D000175 ORTHO05D001341 8.1e-20 100.5 97 55.7
Nitab4.5_0000742g0110 Nicotiana tabacum HOM05D000175 ORTHO05D001341 8.1e-20 100.5 121 47.9
PGR102G2923 Punica granatum HOM05D000175 ORTHO05D001341 8.1e-20 100.5 99 52.5
AUR62014208 Chenopodium quinoa HOM05D000175 ORTHO05D001341 1.1e-19 100.1 107 48.6
Eucgr.B02899 Eucalyptus grandis HOM05D000175 ORTHO05D001341 1.1e-19 100.1 108 52.8
Manes.17G076700 Manihot esculenta HOM05D000175 ORTHO05D001341 1.4e-19 99.8 110 52.7
PGSC0003DMG400030542 Solanum tuberosum HOM05D000175 ORTHO05D001341 1.4e-19 99.8 123 44.7
Sc14g0007140 Simmondsia chinensis HOM05D000175 ORTHO05D001341 1.8e-19 99.4 107 49.5
Hma1.2p1_0346F.1_g131340 Hydrangea macrophylla HOM05D000175 ORTHO05D001341 2.4e-19 99.0 72 66.7
Hund24980 Selenicereus undatus HOM05D000175 ORTHO05D001341 2.4e-19 99.0 96 51.0
RcHm_v2.0_Chr4g0441231 Rosa chinensis HOM05D000175 ORTHO05D001341 3.1e-19 98.6 108 50.9
arahy.Tifrunner.gnm1.ann1.42V4U6 Arachis hypogaea HOM05D000175 ORTHO05D001341 5.3e-19 97.8 98 55.1
MD16G1028400 Malus domestica HOM05D000175 ORTHO05D001341 5.3e-19 97.8 111 54.1
Sopen05g003970 Solanum pennellii HOM05D000175 ORTHO05D001341 5.3e-19 97.8 122 45.1
TAR017G0003 Trochodendron aralioides HOM05D000175 ORTHO05D001341 1.2e-18 96.7 109 53.2
Ca_18726_v3 Cicer arietinum L. HOM05D000175 ORTHO05D001341 2.6e-18 95.5 73 60.3
CAN.G1298.3 Capsicum annuum HOM05D000175 ORTHO05D001341 4.5e-18 94.7 121 44.6
Rhsim09G0067100 Rhododendron simsii HOM05D000175 ORTHO05D001341 5.8e-18 94.4 116 47.4
Actinidia17751 Actinidia chinensis HOM05D001314 ORTHO05D001341 2.2e-17 92.4 112 50.9
Medtr4g085070 Medicago truncatula HOM05D000175 ORTHO05D001341 2.9e-17 92.0 70 65.7
EL10Ac6g14218 Beta vulgaris HOM05D000175 ORTHO05D001341 1.9e-16 89.4 72 58.3
Oeu003393.1 Olea europaea HOM05D000175 ORTHO05D001341 3.2e-16 88.6 119 43.7
vmacro00418 Vaccinium macrocarpon HOM05D000175 ORTHO05D001341 5.5e-16 87.8 116 44.0
Cpa.g.sc65.133 Carica papaya HOM05D000175 ORTHO05D001341 9.3e-16 87.0 105 48.6
TWI31G1410 Tripterygium wilfordii HOM05D000175 ORTHO05D001341 9.3e-16 87.0 117 47.0
Lj3A872T49 Lonicera japonica HOM05D000175 ORTHO05D001341 1.6e-15 86.3 120 44.2
TWI79G1124 Tripterygium wilfordii HOM05D000175 ORTHO05D001341 1.6e-15 86.3 107 48.6
MSTRG.13584 Avicennia marina HOM05D000175 ORTHO05D001341 2.1e-15 85.9 122 44.3
DCAR_023606 Daucus carota HOM05D000175 ORTHO05D001341 3.5e-15 85.1 83 53.0
SGA_v2.0_scaffold39G15164 Striga asiatica HOM05D000175 ORTHO05D001341 4.6e-15 84.7 65 61.5
Lsat_1_v5_gn_4_14581 Lactuca sativa HOM05D000175 ORTHO05D001341 5.1e-14 81.3 112 42.0
unitig_699.g19532 Utricularia gibba HOM05D000175 ORTHO05D001341 5.1e-14 81.3 59 61.0
Nn4g24139 Nelumbo nucifera HOM05D000175 ORTHO05D001341 6.7e-14 80.9 116 47.4
Aa31LG4G10060 Aethionema arabicum HOM05D000175 ORTHO05D001341 2.5e-13 79.0 67 58.2
A07p37400 Brassica napus HOM05D000175 ORTHO05D001341 2.5e-13 79.0 109 45.0
BraA07t31298Z Brassica rapa HOM05D000175 ORTHO05D001341 2.5e-13 79.0 109 45.0
Cc00_g18320 Coffea canephora HOM05D000175 ORTHO05D001341 9.6e-13 77.0 66 60.6
Cc11_g08740 Coffea canephora HOM05D000175 ORTHO05D001341 9.6e-13 77.0 66 60.6
BcaB03g14861 Brassica carinata HOM05D000175 ORTHO05D001341 1.3e-12 76.6 109 45.0
Psat7g127960 Pisum sativum HOM05D000175 ORTHO05D001341 1.3e-12 76.6 71 50.7
Sp5g26150 Schrenkiella parvula HOM05D000175 ORTHO05D001341 1.3e-12 76.6 107 44.9
MSTRG.2172 Avicennia marina HOM05D000175 ORTHO05D001341 1.6e-12 76.3 61 59.0
Migut.E00422 Erythranthe guttata HOM05D000175 ORTHO05D001341 1.6e-12 76.3 76 51.3
C06p45090 Brassica napus HOM05D000175 ORTHO05D001341 2.1e-12 75.9 109 44.0
BolC6t39567H Brassica oleracea HOM05D000175 ORTHO05D001341 2.1e-12 75.9 109 44.0
ECA234G1097 Erigeron canadensis HOM05D000175 ORTHO05D001341 2.8e-12 75.5 101 42.6
Thhalv10019285m.g Eutrema salsugineum HOM05D000175 ORTHO05D001341 4.8e-12 74.7 60 63.3
BcaC08g46545 Brassica carinata HOM05D000175 ORTHO05D001341 1.1e-11 73.6 109 43.1
A02p17080 Brassica napus HOM05D000175 ORTHO05D001341 2.4e-11 72.4 107 41.1
BraA02t06753Z Brassica rapa HOM05D000175 ORTHO05D001341 2.4e-11 72.4 107 41.1
CDE06G2227 Ceratophyllum demersum HOM05D000175 ORTHO05D001341 3.1e-11 72.0 52 71.2
Carub.0002s1779 Capsella rubella HOM05D000175 ORTHO05D001341 5.3e-11 71.2 65 56.9
HanXRQChr17g0566931 Helianthus annuus HOM05D000175 ORTHO05D001341 5.3e-11 71.2 99 44.4
CARHR064280 Cardamine hirsuta HOM05D000175 ORTHO05D001341 9.0e-11 70.5 65 56.9
ATR0053G037 Amborella trichopoda HOM05D000175 ORTHO05D001341 1.5e-10 69.7 63 55.6
BcaB05g24634 Brassica carinata HOM05D000175 ORTHO05D001341 2.0e-10 69.3 60 58.3
CsaV3_5G028590 Cucumis sativus L. HOM05D000175 ORTHO05D001341 2.0e-10 69.3 59 62.7
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 2.6e-10 68.9 54 66.7
HanXRQChr12g0377581 Helianthus annuus HOM05D000175 ORTHO05D001341 3.4e-10 68.6 92 41.3
unitig_27.g25265 Utricularia gibba HOM05D000175 ORTHO05D001341 4.5e-10 68.2 56 58.9
C02p28500 Brassica napus HOM05D000175 ORTHO05D001341 5.8e-10 67.8 55 60.0
BolC2t08891H Brassica oleracea HOM05D000175 ORTHO05D001341 5.8e-10 67.8 55 60.0
MBI18_g04580_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D001341 7.6e-10 67.4 83 49.4
Sc09g0002750 Simmondsia chinensis HOM05D000175 ORTHO05D001341 1.3e-09 66.6 83 48.2
ClCG01G006090 Citrullus lanatus HOM05D000175 ORTHO05D001341 2.2e-09 65.9 57 63.2
Ah.06g189060 Amaranthus hybridus HOM05D000175 ORTHO05D001341 3.8e-09 65.1 53 62.3
EL10Ac4g09848 Beta vulgaris HOM05D000175 ORTHO05D001341 4.9e-09 64.7 53 60.4
AUR62000707 Chenopodium quinoa HOM05D000175 ORTHO05D001341 4.9e-09 64.7 53 60.4
AUR62005258 Chenopodium quinoa HOM05D000175 ORTHO05D001341 4.9e-09 64.7 53 60.4
THA.LOC104823014 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 4.9e-09 64.7 68 52.9
TAR633G1398 Trochodendron aralioides HOM05D000175 ORTHO05D001341 4.9e-09 64.7 53 62.3
Hund21736 Selenicereus undatus HOM05D000175 ORTHO05D001341 8.4e-09 63.9 53 60.4
Zm00001eb161610 Zea mays HOM05D000175 ORTHO05D001341 1.4e-08 63.2 62 58.1
Sed0026983 Sechium edule HOM05D000175 ORTHO05D001341 1.9e-08 62.8 73 52.1
Aqoxy2G02820 Aquilegia oxysepala HOM05D000175 ORTHO05D001341 2.5e-08 62.4 54 63.0
Atru.chr2.134 Acer truncatum HOM05D000175 ORTHO05D001341 3.2e-08 62.0 53 54.7
Hund05455 Selenicereus undatus HOM05D000175 ORTHO05D001341 3.2e-08 62.0 51 58.8
ATR0796G102 Amborella trichopoda HOM05D000175 ORTHO05D001341 4.2e-08 61.6 78 46.2
arahy.Tifrunner.gnm1.ann1.374HIW Arachis hypogaea HOM05D000175 ORTHO05D001341 5.5e-08 61.2 53 56.6
arahy.Tifrunner.gnm1.ann1.Q2KLD3 Arachis hypogaea HOM05D000175 ORTHO05D001341 5.5e-08 61.2 53 56.6
Potri.013G010800 Populus trichocarpa HOM05D000175 ORTHO05D001341 5.5e-08 61.2 53 58.5
Phvul.001G226300 Phaseolus vulgaris HOM05D000175 ORTHO05D001341 7.1e-08 60.8 53 58.5
Potri.005G020300 Populus trichocarpa HOM05D000175 ORTHO05D001341 9.3e-08 60.5 82 45.1
GSVIVG01010005001 Vitis vinifera HOM05D000175 ORTHO05D001341 9.3e-08 60.5 63 50.8
Ciclev10002746m.g Citrus clementina HOM05D000175 ORTHO05D001341 1.2e-07 60.1 53 58.5
Lj1g0000429 Lotus japonicus HOM05D000175 ORTHO05D001341 1.2e-07 60.1 53 54.7
Os01g0606900 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D001341 1.2e-07 60.1 78 48.7
Carub.0002s0786 Capsella rubella HOM05D000175 ORTHO05D001341 1.6e-07 59.7 64 45.3
Cfa006680 Carpinus fangiana HOM05D000175 ORTHO05D001341 1.6e-07 59.7 89 43.8
Sabra13G0009300 Salix brachista HOM05D000175 ORTHO05D001341 1.6e-07 59.7 53 56.6
VMungo1383G0370 Vigna mungo HOM05D000175 ORTHO05D001341 1.6e-07 59.7 53 56.6
Glyma.19G229700 Glycine max HOM05D000175 ORTHO05D001341 2.1e-07 59.3 70 48.6
Eucgr.L02648 Eucalyptus grandis HOM05D000175 ORTHO05D001341 2.7e-07 58.9 53 58.5
FAN05G1575 Fragaria x ananassa HOM05D000175 ORTHO05D001341 2.7e-07 58.9 50 60.0
THA.LOC104820698 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 2.7e-07 58.9 53 52.8
CiPaw.08G157200 Carya illinoinensis HOM05D000175 ORTHO05D001341 3.5e-07 58.5 76 46.1
FAN14G3241 Fragaria x ananassa HOM05D000175 ORTHO05D001341 3.5e-07 58.5 50 60.0
Gohir.D11G281600 Gossypium hirsutum HOM05D000175 ORTHO05D001341 3.5e-07 58.5 53 56.6
Gorai.007G304100 Gossypium raimondii HOM05D000175 ORTHO05D001341 3.5e-07 58.5 53 56.6
RcHm_v2.0_Chr3g0456731 Rosa chinensis HOM05D000175 ORTHO05D001341 3.5e-07 58.5 53 56.6
CANSAT54G1446 Cannabis sativa HOM05D000175 ORTHO05D001341 4.6e-07 58.2 53 54.7
Ca_09319_v3 Cicer arietinum L. HOM05D000175 ORTHO05D001341 4.6e-07 58.2 53 54.7
Medtr7g112360 Medicago truncatula HOM05D000175 ORTHO05D001341 4.6e-07 58.2 53 54.7
Aa31LG2G11560 Aethionema arabicum HOM05D000175 ORTHO05D001341 6.0e-07 57.8 53 50.9
Duzib177G1125 Durio zibethinus HOM05D000175 ORTHO05D001341 6.0e-07 57.8 53 54.7
Eucgr.B02081 Eucalyptus grandis HOM05D000175 ORTHO05D001341 6.0e-07 57.8 53 56.6
BcaC09g49566 Brassica carinata HOM05D000175 ORTHO05D001341 7.9e-07 57.4 78 43.6
C01p35190 Brassica napus HOM05D000175 ORTHO05D001341 7.9e-07 57.4 78 43.6
BolC1t03478H Brassica oleracea HOM05D000175 ORTHO05D001341 7.9e-07 57.4 78 43.6
Manes.08G113000 Manihot esculenta HOM05D000175 ORTHO05D001341 7.9e-07 57.4 53 54.7
Gohir.A11G271400 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.0e-06 57.0 53 54.7
Sabra05G0026300 Salix brachista HOM05D000175 ORTHO05D001341 1.0e-06 57.0 53 56.6
BcaB04g20157 Brassica carinata HOM05D000175 ORTHO05D001341 1.3e-06 56.6 76 43.4
Cpa.g.sc48.135 Carica papaya HOM05D000175 ORTHO05D001341 1.3e-06 56.6 53 54.7
QL03p018046 Quercus lobata HOM05D000175 ORTHO05D001341 1.3e-06 56.6 76 43.4
Solyc05g008120.4 Solanum lycopersicum HOM05D000175 ORTHO05D001341 1.3e-06 56.6 60 46.7
TPR.G1618 Trifolium pratense HOM05D000175 ORTHO05D001341 1.3e-06 56.6 53 52.8
A01p27370 Brassica napus HOM05D000175 ORTHO05D001341 1.8e-06 56.2 78 42.3
BraA01t02877Z Brassica rapa HOM05D000175 ORTHO05D001341 1.8e-06 56.2 78 42.3
CDE02G1526 Ceratophyllum demersum HOM05D000175 ORTHO05D001341 1.8e-06 56.2 49 59.2
CDE08G0006 Ceratophyllum demersum HOM05D000175 ORTHO05D001341 1.8e-06 56.2 49 59.2
Duzib106G0708 Durio zibethinus HOM05D000175 ORTHO05D001341 1.8e-06 56.2 50 56.0
Lalb_Chr16g0384941 Lupinus albus HOM05D000175 ORTHO05D001341 1.8e-06 56.2 34 76.5
Zm00001eb014050 Zea mays HOM05D000175 ORTHO05D001341 1.8e-06 56.2 87 37.9
AT1G56300 Arabidopsis thaliana HOM05D000175 ORTHO05D001341 3.0e-06 55.5 53 49.1
CsaV3_2G006870 Cucumis sativus L. HOM05D000175 ORTHO05D001341 3.0e-06 55.5 89 38.2
PGR083G1500 Punica granatum HOM05D000175 ORTHO05D001341 3.0e-06 55.5 78 42.3
AL1G65910 Arabidopsis lyrata HOM05D000175 ORTHO05D001341 3.9e-06 55.1 53 49.1
ClCG02G015140 Citrullus lanatus HOM05D000175 ORTHO05D001341 3.9e-06 55.1 50 54.0
MELO3C004203.2 Cucumis melo HOM05D000175 ORTHO05D001341 3.9e-06 55.1 89 38.2
Psat3g012600 Pisum sativum HOM05D000175 ORTHO05D001341 3.9e-06 55.1 53 52.8
Sed0019310 Sechium edule HOM05D000175 ORTHO05D001341 5.1e-06 54.7 50 56.0
Thecc.05G320200 Theobroma cacao HOM05D000175 ORTHO05D001341 5.1e-06 54.7 90 42.2
Lalb_Chr18g0045991 Lupinus albus HOM05D000175 ORTHO05D001341 6.7e-06 54.3 54 50.0
Sabra10G0083400 Salix brachista HOM05D000175 ORTHO05D001341 6.7e-06 54.3 37 67.6


User provided reference genes

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