Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 3.9e-105 384.8 195 100.0
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 5.7e-104 380.9 195 98.5
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 5.7e-104 380.9 195 98.5
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 7.4e-104 380.6 195 97.9
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.7e-103 379.4 195 97.9
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.2e-103 379.0 195 97.9
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 2.8e-103 378.6 195 97.9
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 3.7e-103 378.3 195 97.4
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 97.9
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 97.9
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 97.9
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 96.9
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 97.4
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 96.9
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.8e-102 375.9 195 96.9
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.8e-102 375.9 195 96.9
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.8e-102 375.9 195 96.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.8e-102 375.9 195 96.9
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.8e-102 375.9 195 96.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.4
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.9
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 4.1e-102 374.8 195 96.4
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 5.3e-102 374.4 193 96.9
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.9
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 96.4
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 95.9
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 95.9
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 96.4
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.4
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.9
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.9
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 94.9
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 94.9
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 94.9
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 95.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.9
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 95.4
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 95.9
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 93.8
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 92.8
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.4
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 93.8
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 3.8e-100 368.2 199 94.5
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 93.8
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 93.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 8.5e-100 367.1 187 98.4
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 8.5e-100 367.1 186 98.9
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 94.4
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.8
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.3
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.8
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.8
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.9e-99 365.9 188 97.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 92.8
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 2.5e-99 365.5 185 98.9
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 93.8
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.5e-99 365.5 185 98.4
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 92.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 94.3
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 7.2e-99 364.0 185 98.4
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 93.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 91.3
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.8
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 92.8
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.6e-98 362.8 189 95.2
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.6e-98 362.8 189 96.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 91.3
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.1e-98 362.5 185 98.4
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 92.8
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.1e-98 360.9 189 95.2
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.0e-97 360.1 193 91.7
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.8e-97 359.4 196 91.3
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 91.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.8e-97 359.4 195 91.8
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 2.3e-97 359.0 185 96.8
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 3.0e-97 358.6 193 92.2
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 3.9e-97 358.2 187 94.7
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.5e-96 356.3 186 94.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 2.6e-96 355.5 186 94.6
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 5.7e-96 354.4 187 94.1
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 7.4e-96 354.0 186 94.6
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 9.7e-96 353.6 195 89.7
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 94.6
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 94.6
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 6.3e-95 350.9 216 84.7
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 8.2e-95 350.5 186 92.5
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 8.2e-95 350.5 186 91.9
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.1e-94 350.1 218 83.5
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 7.0e-94 347.4 195 90.8
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 1.0e-92 343.6 195 86.7
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.5e-91 339.7 195 86.7
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.2e-91 338.2 195 87.7
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.6e-90 336.3 226 77.9
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 1.8e-89 332.8 195 86.2
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 9.7e-88 327.0 176 92.6
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 6.3e-87 324.3 194 79.9
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 8.2e-87 323.9 195 85.1
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.4e-86 323.2 195 80.0
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 3.2e-83 312.0 195 84.1
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 2.1e-82 309.3 194 83.5
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 2.7e-82 308.9 195 83.6
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.4e-81 306.6 195 82.6
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 5.7e-80 301.2 195 81.0
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.0e-77 292.7 186 82.3
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.0e-77 292.7 186 82.3
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.3e-76 290.0 186 81.7
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.9e-76 288.9 150 97.3
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 6.5e-76 287.7 166 86.1
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.2e-72 276.9 195 73.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.7e-69 265.8 134 97.0
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.4e-62 243.4 181 65.2
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.4e-62 243.4 142 83.8
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.0e-60 237.3 180 70.6
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.3e-60 236.9 124 95.2
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.4e-56 222.2 119 95.0
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.5e-56 221.1 123 90.2
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 8.3e-55 217.6 148 77.7
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 7.5e-48 194.5 187 61.5
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 2.9e-47 192.6 188 51.6
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 8.6e-44 181.0 93 96.8
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.1e-43 180.6 173 53.2
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-39 167.2 123 73.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.9e-39 166.0 83 97.6
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.6e-36 154.8 75 100.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.9e-35 153.3 75 98.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.6e-35 151.8 79 97.5
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.6e-28 128.3 70 91.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-27 127.5 70 91.4
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 3.2e-22 109.4 58 89.7
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 2.1e-21 106.7 54 98.1
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.4e-19 98.2 109 54.1
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 8.1e-18 94.7 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.7e-15 87.0 47 87.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.1e-14 84.3 52 75.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 1.2e-13 80.9 90 53.3
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.9e-13 78.2 57 70.2
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 1.8e-12 77.0 41 92.7
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 3.9e-12 75.9 46 84.8
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-11 72.8 43 83.7
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-11 72.8 43 83.7
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4


User provided reference genes

Program Settings