Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 7.1e-62 240.4 115 100.0
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 6.0e-61 237.3 115 98.3
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 4.3e-59 231.1 115 95.7
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 7.6e-56 220.3 112 92.9
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 1.2e-48 196.4 111 80.2
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 1.3e-47 193.0 114 76.3
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 3.8e-47 191.4 114 79.8
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 1.9e-46 189.1 111 76.6
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 4.2e-46 188.0 111 77.5
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 5.4e-46 187.6 112 77.7
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 5.4e-46 187.6 111 78.4
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 5.4e-46 187.6 111 78.4
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 7.1e-46 187.2 111 78.4
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 7.1e-46 187.2 111 76.6
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 7.1e-46 187.2 114 72.8
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 7.1e-46 187.2 111 77.5
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 9.3e-46 186.8 115 74.8
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 9.3e-46 186.8 115 74.8
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 9.3e-46 186.8 115 75.7
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 9.3e-46 186.8 115 75.7
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 1.2e-45 186.4 113 77.0
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 1.2e-45 186.4 112 74.1
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 1.6e-45 186.0 115 74.8
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 2.1e-45 185.7 115 75.7
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 2.7e-45 185.3 113 75.2
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 3.5e-45 184.9 114 74.6
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 3.5e-45 184.9 114 73.7
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 4.6e-45 184.5 114 72.8
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 6.0e-45 184.1 111 77.5
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 1.0e-44 183.3 110 73.6
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 1.0e-44 183.3 114 73.7
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 1.7e-44 182.6 115 72.2
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 2.3e-44 182.2 114 72.8
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 3.0e-44 181.8 111 76.6
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 3.9e-44 181.4 111 77.5
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 6.6e-44 180.6 114 73.7
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 8.7e-44 180.3 114 72.8
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.5e-43 179.5 114 72.8
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.5e-43 179.5 114 72.8
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 1.9e-43 179.1 122 72.1
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.5e-43 178.7 113 72.6
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.5e-43 178.7 114 71.9
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 4.3e-43 177.9 105 78.1
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 5.6e-43 177.6 112 74.1
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 1.3e-42 176.4 114 72.8
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 3.6e-42 174.9 100 81.0
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 6.2e-42 174.1 111 75.7
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 8.1e-42 173.7 104 77.9
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 8.1e-42 173.7 104 77.9
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 8.1e-42 173.7 104 77.9
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 8.1e-42 173.7 100 80.0
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 2.4e-41 172.2 100 79.0
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 6.9e-41 170.6 111 70.3
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 1.2e-40 169.9 113 69.0
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 2.6e-40 168.7 112 69.6
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 2.6e-40 168.7 100 77.0
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 2.6e-40 168.7 126 65.9
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 4.5e-40 167.9 100 80.0
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 4.5e-40 167.9 100 80.0
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 5.8e-40 167.5 111 67.6
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 5.8e-40 167.5 100 77.0
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 7.6e-40 167.2 100 80.0
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 7.6e-40 167.2 100 77.0
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 7.6e-40 167.2 100 77.0
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 9.9e-40 166.8 113 65.5
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 1.3e-39 166.4 107 72.9
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 1.3e-39 166.4 100 75.0
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.2e-39 165.6 100 77.0
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 2.2e-39 165.6 98 78.6
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.9e-39 165.2 135 59.3
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 2.9e-39 165.2 99 76.8
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 4.9e-39 164.5 100 75.0
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 1.1e-38 163.3 106 68.9
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.1e-38 163.3 100 73.0
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.4e-38 162.9 100 73.0
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 1.4e-38 162.9 113 63.7
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 1.9e-38 162.5 100 75.0
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 2.4e-38 162.2 99 74.7
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 3.2e-38 161.8 99 76.8
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 3.2e-38 161.8 100 76.0
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 3.2e-38 161.8 113 66.4
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 3.2e-38 161.8 100 77.0
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 3.2e-38 161.8 111 66.7
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 3.2e-38 161.8 98 74.5
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 7.1e-38 160.6 106 68.9
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 1.2e-37 159.8 100 72.0
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 1.6e-37 159.5 100 71.0
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.6e-37 159.5 131 62.6
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 2.1e-37 159.1 100 74.0
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 2.7e-37 158.7 100 74.0
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 2.7e-37 158.7 104 69.2
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 2.7e-37 158.7 115 67.0
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 7.9e-37 157.1 100 74.0
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.3e-36 156.4 98 74.5
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 1.8e-36 156.0 98 69.4
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 6.7e-36 154.1 102 71.6
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 1.1e-35 153.3 109 67.0
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 1.5e-35 152.9 98 70.4
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 3.3e-35 151.8 109 65.1
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 5.6e-35 151.0 96 70.8
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 5.6e-35 151.0 100 73.0
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 6.2e-34 147.5 91 74.7
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 8.1e-34 147.1 89 75.3
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.1e-33 146.7 87 72.4
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 4.0e-33 144.8 88 75.0
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.2e-32 143.3 108 64.8
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 3.4e-32 141.7 98 65.3
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 7.6e-32 140.6 109 64.2
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 1.0e-31 140.2 84 79.8
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.9e-30 136.0 102 58.8
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 7.1e-30 134.0 87 66.7
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 1.6e-29 132.9 100 61.0
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 7.9e-29 130.6 92 62.0
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.1e-27 126.7 81 71.6
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.1e-27 126.7 96 59.4
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 9.6e-27 123.6 106 55.7
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 3.1e-25 118.6 75 72.0
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 9.0e-25 117.1 89 60.7
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 1.2e-24 116.7 75 72.0
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.4e-22 109.8 101 50.5
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 1.4e-22 109.8 93 54.8
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 2.1e-21 105.9 63 74.6
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 3.0e-20 102.1 72 65.3
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 9.7e-19 97.1 74 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 8.2e-18 94.0 64 62.5
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 1.2e-16 90.1 66 65.2
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.8e-12 76.3 60 56.7
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 5.7e-11 71.2 71 49.3
MBI15_g07754_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 1.8e-09 66.2 65 52.3
CiPaw.16G114400 Carya illinoinensis HOM05D006119 ORTHO05D007641 5.3e-09 64.7 40 77.5
PSO339G5888 Papaver somniferum HOM05D006119 ORTHO05D007641 9.1e-09 63.9 108 36.1
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 2.6e-08 62.4 36 80.6


User provided reference genes

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