Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.0e-44 181.4 90 100.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 3.9e-39 164.5 86 93.0
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.2e-37 157.1 86 86.0
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-30 136.3 87 74.7
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.3e-30 133.7 86 75.6
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 9.5e-30 133.3 86 77.9
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.8e-28 127.1 86 73.3
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.8e-28 127.1 86 73.3
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-27 125.9 86 72.1
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 3.2e-25 118.2 74 75.7
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.1e-24 115.5 74 71.6
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.6e-24 114.4 80 68.8
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.6e-24 114.4 80 68.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 4.6e-24 114.4 74 70.3
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.0e-23 113.2 74 70.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-22 109.8 72 65.3
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.9e-22 109.0 83 62.7
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.3e-22 108.2 82 64.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.6e-22 107.5 86 65.1
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.3e-22 107.1 74 70.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 7.3e-22 107.1 83 62.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.2e-21 106.3 87 64.4
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.6e-21 105.9 72 72.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.1e-21 105.5 82 65.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.8e-21 105.1 68 70.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.8e-21 105.1 65 73.8
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.6e-21 104.8 82 62.2
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 6.2e-21 104.0 83 63.9
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 6.2e-21 104.0 82 65.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 8.1e-21 103.6 65 75.4
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-20 103.2 64 73.4
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-20 103.2 82 62.2
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.4e-20 102.8 77 67.5
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 2.4e-20 102.1 83 57.8
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.4e-20 102.1 68 69.1
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 3.1e-20 101.7 84 59.5
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.1e-20 101.7 83 61.4
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.0e-20 101.3 83 60.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 4.0e-20 101.3 73 67.1
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.2e-20 100.9 83 61.4
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 5.2e-20 100.9 65 72.3
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.8e-20 100.5 73 68.5
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 8.9e-20 100.1 84 58.3
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-19 99.8 65 70.8
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.5e-19 99.4 89 56.2
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.5e-19 99.4 76 65.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.6e-19 98.6 64 70.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.6e-19 98.6 86 57.0
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 4.4e-19 97.8 81 63.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 4.4e-19 97.8 81 63.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.4e-19 97.8 79 59.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.4e-19 97.8 79 59.5
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.8e-19 97.4 73 67.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 5.8e-19 97.4 83 57.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.6e-19 97.1 79 63.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 9.9e-19 96.7 87 56.3
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.9e-19 96.7 83 59.0
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.3e-18 96.3 83 60.2
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.3e-18 96.3 83 59.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.7e-18 95.9 82 58.5
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.2e-18 95.5 83 60.2
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.2e-18 95.5 84 56.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.2e-18 95.5 83 57.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.2e-18 95.5 74 63.5
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.2e-18 95.5 89 53.9
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.9e-18 95.1 83 55.4
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 3.8e-18 94.7 71 64.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 3.8e-18 94.7 83 60.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 3.8e-18 94.7 75 65.3
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.9e-18 94.4 84 56.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 4.9e-18 94.4 83 57.8
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 4.9e-18 94.4 84 56.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 6.4e-18 94.0 83 57.8
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 6.4e-18 94.0 84 58.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 8.4e-18 93.6 83 57.8
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 8.4e-18 93.6 83 57.8
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 8.4e-18 93.6 83 57.8
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 8.4e-18 93.6 83 57.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 8.4e-18 93.6 83 55.4
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.1e-17 93.2 75 61.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-17 92.8 83 59.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.4e-17 92.8 82 58.5
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.9e-17 92.4 66 66.7
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.9e-17 92.4 82 59.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.4e-17 92.0 83 55.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.4e-17 92.0 83 51.8
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.2e-17 91.7 85 54.1
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.2e-17 91.7 83 56.6
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.2e-17 91.7 83 56.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 4.2e-17 91.3 84 54.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 4.2e-17 91.3 83 53.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 5.4e-17 90.9 83 56.6
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.4e-17 90.9 74 64.9
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.4e-17 90.9 83 56.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 7.1e-17 90.5 83 55.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 9.2e-17 90.1 82 56.1
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 9.2e-17 90.1 73 60.3
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 9.2e-17 90.1 87 55.2
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.2e-16 89.7 88 55.7
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.2e-16 89.7 83 54.2
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.2e-16 89.7 83 50.6
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-16 89.7 61 70.5
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.6e-16 89.4 83 56.6
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.6e-16 89.4 83 55.4
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.1e-16 89.0 82 57.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.1e-16 89.0 83 55.4
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.1e-16 89.0 83 56.6
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.1e-16 89.0 86 58.1
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.5e-16 88.2 83 54.2
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 55.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 55.0
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 3.5e-16 88.2 82 56.1
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 3.5e-16 88.2 82 56.1
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 56.2
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 56.2
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 56.2
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 3.5e-16 88.2 80 56.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.5e-16 88.2 86 58.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 7.8e-16 87.0 74 63.5
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 7.8e-16 87.0 74 63.5
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 7.8e-16 87.0 74 63.5
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 7.8e-16 87.0 74 63.5
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 7.8e-16 87.0 74 63.5
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.0e-15 86.7 86 57.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.0e-15 86.7 83 53.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.0e-15 86.7 83 51.8
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.3e-15 86.3 82 50.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 1.3e-15 86.3 80 55.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.3e-15 86.3 84 53.6
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.7e-15 85.9 80 56.2
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-15 85.5 65 67.7
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 3.0e-15 85.1 85 54.1
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.0e-15 85.1 83 51.8
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.9e-15 84.7 83 53.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.9e-15 84.7 89 50.6
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.9e-15 84.7 83 51.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 6.6e-15 84.0 83 51.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 6.6e-15 84.0 83 53.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 8.7e-15 83.6 81 53.1
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-14 83.2 83 51.8
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-14 82.8 74 62.2
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.5e-14 82.8 83 50.6
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.3e-14 81.3 87 54.0
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.3e-14 81.3 87 54.0
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.3e-14 81.3 87 54.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 4.3e-14 81.3 82 52.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 5.6e-14 80.9 68 55.9
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.6e-14 80.9 87 55.2
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 7.3e-14 80.5 87 54.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.3e-14 80.5 84 51.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 7.3e-14 80.5 83 48.2
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 9.6e-14 80.1 87 54.0
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 9.6e-14 80.1 87 54.0
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 9.6e-14 80.1 87 54.0
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.2e-13 79.7 87 54.0
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.2e-13 79.7 87 54.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.2e-13 79.7 71 52.1
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.6e-13 79.3 74 59.5
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.6e-13 79.3 87 52.9
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.1e-13 79.0 87 52.9
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.1e-13 79.0 87 52.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.1e-13 79.0 83 48.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.8e-13 78.6 87 51.7
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.8e-13 78.6 82 48.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.8e-13 78.6 82 48.8
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.6e-13 78.2 83 48.2
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 4.7e-13 77.8 83 48.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 6.2e-13 77.4 87 51.7
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.4e-12 76.3 74 54.1
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 6.9e-12 73.9 83 43.4
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 2.0e-11 72.4 87 48.3
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.8e-11 70.9 48 72.9
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.3e-10 69.7 65 50.8
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.3e-10 69.7 77 48.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.8e-10 68.2 64 53.1
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.4e-10 67.4 48 68.8
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.4e-09 65.5 79 44.3
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 9.3e-09 63.5 62 51.6
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 9.3e-09 63.5 78 47.4
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.2e-08 63.2 83 47.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.0e-07 60.1 49 59.2
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 1.7e-07 59.3 65 47.7
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 7.3e-06 53.9 82 40.2
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 7.3e-06 53.9 82 40.2


User provided reference genes

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