Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.2e-116 421.8 216 100.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.2e-92 342.0 190 93.7
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.8e-87 326.2 184 91.8
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.7e-78 295.8 184 81.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.5e-76 290.0 184 79.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.7e-69 266.5 184 75.5
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.0e-66 257.3 184 71.2
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.4e-65 251.9 184 70.7
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 5.8e-65 251.5 188 69.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 6.4e-64 248.1 192 64.6
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 8.3e-64 247.7 184 68.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.4e-63 246.9 184 69.0
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 4.1e-63 245.4 185 71.4
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 9.2e-63 244.2 185 71.9
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 6.0e-62 241.5 184 67.9
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.3e-61 240.4 184 66.3
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.7e-61 240.0 185 69.2
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-61 240.0 187 67.9
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.0e-61 239.2 185 68.6
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 8.6e-61 237.7 185 68.1
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 2.5e-60 236.1 184 63.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.5e-60 236.1 186 65.6
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 2.1e-59 233.0 185 63.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 2.8e-59 232.6 185 64.9
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 2.8e-59 232.6 185 63.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 4.7e-59 231.9 184 65.2
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 8.1e-59 231.1 185 63.2
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 8.1e-59 231.1 185 63.2
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 2.3e-58 229.6 185 63.8
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 5.2e-58 228.4 207 60.4
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 6.8e-58 228.0 185 66.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 8.9e-58 227.6 185 62.7
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.2e-57 227.3 167 71.3
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.2e-57 227.3 184 62.5
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.5e-57 226.9 185 62.2
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 2.0e-57 226.5 185 63.2
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.4e-57 225.3 204 59.3
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 9.8e-57 224.2 185 64.3
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.7e-56 223.4 187 63.1
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 4.9e-56 221.9 184 64.7
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.4e-56 221.5 233 55.4
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 8.3e-56 221.1 188 63.3
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.9e-55 219.9 184 64.1
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.9e-55 219.9 187 63.1
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.4e-55 219.5 188 59.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 2.4e-55 219.5 192 60.9
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 3.2e-55 219.2 199 56.8
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 5.4e-55 218.4 187 62.6
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.4e-55 218.4 185 62.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 7.1e-55 218.0 185 61.1
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 9.2e-55 217.6 223 52.5
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 9.2e-55 217.6 190 57.9
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.6e-54 216.9 184 59.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.0e-54 214.9 185 58.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.7e-53 213.4 197 57.4
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.7e-53 213.4 186 59.7
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.3e-53 213.0 185 57.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 6.6e-53 211.5 184 57.1
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 6.6e-53 211.5 187 60.4
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 6.6e-53 211.5 182 60.4
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.9e-52 209.9 163 70.6
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.6e-52 208.4 190 55.3
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 9.5e-52 207.6 184 56.0
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 9.5e-52 207.6 184 58.7
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.6e-51 206.8 186 57.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.7e-51 205.3 184 58.7
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 6.2e-51 204.9 184 56.5
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.1e-50 202.6 187 52.9
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 8.9e-50 201.1 184 55.4
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 8.9e-50 201.1 141 71.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.2e-49 200.7 184 56.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.5e-49 200.3 184 59.2
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.4e-49 199.1 186 58.1
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.4e-49 198.7 165 60.0
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 9.9e-49 197.6 184 54.3
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 3.8e-48 195.7 187 53.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.9e-47 193.4 187 52.9
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.9e-47 193.4 187 53.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 4.1e-47 192.2 184 54.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 5.4e-47 191.8 187 53.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 9.2e-47 191.0 253 45.8
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.7e-46 189.5 187 52.9
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 6.0e-46 188.3 187 51.3
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 7.8e-46 188.0 185 51.9
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.3e-45 187.2 187 57.2
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.9e-45 185.7 187 56.7
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.5e-44 183.0 187 49.7
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.2e-43 180.6 187 49.2
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.6e-43 180.3 187 49.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.1e-43 179.9 168 58.3
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.5e-41 173.7 191 51.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.1e-39 167.5 147 57.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 4.6e-38 162.2 184 47.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 7.8e-38 161.4 162 54.3
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 5.1e-37 158.7 185 48.1
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 5.1e-37 158.7 181 51.4
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.3e-36 155.6 191 46.1
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 5.6e-36 155.2 131 63.4
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 2.1e-35 153.3 184 43.5
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.8e-35 152.1 193 42.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.0e-33 146.7 130 60.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 5.8e-33 145.2 159 46.5
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 8.4e-32 141.4 128 58.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.1e-31 141.0 134 58.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.4e-31 139.8 176 42.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.8e-29 133.7 100 65.0
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 8.7e-29 131.3 121 59.5
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.6e-28 128.6 141 51.8
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.3e-27 127.5 145 47.6
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.8e-26 123.6 110 52.7
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.1e-26 122.9 102 62.7
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.1e-26 122.9 88 70.5
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.2e-22 110.9 80 66.2
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.1e-22 110.2 84 67.9
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 7.9e-22 108.2 109 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 6.7e-21 105.1 142 42.3
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 9.6e-20 101.3 84 64.3
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 6.2e-19 98.6 93 54.8
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 6.9e-18 95.1 180 32.8
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 9.0e-18 94.7 61 68.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.6e-14 84.0 107 42.1
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.8e-10 70.5 59 62.7
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 5.9e-09 65.5 45 66.7
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.7e-06 56.6 45 57.8


User provided reference genes

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