Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020792 Carpinus fangiana HOM05D001578 ORTHO05D001207 7.6e-92 340.5 175 100.0
Haze_19150 Corylus avellana HOM05D002122 ORTHO05D001207 8.2e-62 240.7 148 80.4
Rhsim03G0038200 Rhododendron simsii HOM05D001578 ORTHO05D001207 5.4e-21 105.1 169 37.9
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 4.6e-20 102.1 175 36.0
Rhsim03G0038400 Rhododendron simsii HOM05D001578 ORTHO05D001207 2.3e-19 99.8 171 39.2
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 6.6e-19 98.2 162 35.8
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.1e-18 97.4 152 37.5
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.5e-18 97.1 161 36.0
Rhsim03G0038700 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.9e-18 96.7 163 38.0
Rhsim03G0038600 Rhododendron simsii HOM05D000036 ORTHO05D005472 9.5e-18 94.4 155 38.1
Ciclev10003542m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.2e-17 94.0 150 35.3
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 2.1e-17 93.2 175 34.9
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 3.6e-17 92.4 171 31.6
Ciclev10004017m.g Citrus clementina HOM05D001578 ORTHO05D001207 4.7e-17 92.0 146 34.2
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 6.2e-17 91.7 143 37.1
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 8.1e-17 91.3 163 33.7
Rhsim13G0002900 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.1e-16 90.9 168 36.3
Ciclev10002621m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.4e-16 90.5 177 30.5
Potri.010G209800 Populus trichocarpa HOM05D004113 ORTHO05D005233 1.8e-16 90.1 169 38.5
Sabra10G0162100 Salix brachista HOM05D004113 ORTHO05D005233 1.8e-16 90.1 178 37.1
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 1.8e-16 90.1 172 32.6
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 4.0e-16 89.0 174 34.5
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 5.2e-16 88.6 143 37.1
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 5.2e-16 88.6 161 33.5
CAN.G758.21 Capsicum annuum HOM05D000365 ORTHO05D000154 6.8e-16 88.2 141 36.9
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 3.4e-15 85.9 145 35.9
Ciclev10023580m.g Citrus clementina HOM05D023468 ORTHO05D022406 3.4e-15 85.9 165 31.5
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 3.4e-15 85.9 143 35.0
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 3.4e-15 85.9 143 35.0
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 4.4e-15 85.5 59 78.0
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 4.4e-15 85.5 150 32.7
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.6e-15 84.7 167 31.1
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 9.9e-15 84.3 162 35.2
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.3e-14 84.0 171 33.9
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.3e-14 84.0 171 33.9
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.7e-14 83.6 162 35.2
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 1.7e-14 83.6 166 31.9
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.7e-14 83.6 160 34.4
Manes.10G035700 Manihot esculenta HOM05D004113 ORTHO05D005233 2.2e-14 83.2 174 33.9
Manes.10G035400 Manihot esculenta HOM05D004113 ORTHO05D005233 3.7e-14 82.4 174 33.9
Cpa.g.sc9.24 Carica papaya HOM05D001578 ORTHO05D001207 4.9e-14 82.0 173 30.6
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 4.9e-14 82.0 145 34.5
MD13G1149700 Malus domestica HOM05D001578 ORTHO05D001207 4.9e-14 82.0 174 30.5
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 4.9e-14 82.0 152 34.9
Prupe.3G007900 Prunus persica HOM05D001445 ORTHO05D001207 4.9e-14 82.0 173 31.8
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 6.4e-14 81.6 167 29.9
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 6.4e-14 81.6 167 29.9
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.1e-13 80.9 150 34.7
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.4e-13 80.5 177 34.5
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.4e-13 80.5 174 31.6
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.9e-13 80.1 150 34.7
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.9e-13 80.1 150 34.7
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 1.9e-13 80.1 165 30.9
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.9e-13 80.1 172 30.2
Manes.10G035200 Manihot esculenta HOM05D004113 ORTHO05D005233 3.2e-13 79.3 174 33.3
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 5.4e-13 78.6 175 32.0
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.4e-13 78.6 153 32.7
Cfa006332 Carpinus fangiana HOM05D001578 ORTHO05D001207 7.1e-13 78.2 178 33.7
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 7.1e-13 78.2 172 35.5
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 7.1e-13 78.2 161 34.8
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.2e-13 77.8 148 32.4
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.2e-13 77.8 148 32.4
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 2.1e-12 76.6 167 33.5
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.1e-12 76.6 176 33.0
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.1e-12 76.6 176 33.0
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 2.7e-12 76.3 162 35.2
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 2.7e-12 76.3 170 32.9
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 3.5e-12 75.9 169 32.5
Ciclev10013964m.g Citrus clementina HOM05D001578 ORTHO05D001207 4.6e-12 75.5 125 32.0
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 4.6e-12 75.5 152 34.2
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 6.0e-12 75.1 169 32.0
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 7.8e-12 74.7 159 32.1
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 1.0e-11 74.3 170 31.2
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.0e-11 74.3 170 31.2
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 1.3e-11 73.9 158 31.6
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 1.3e-11 73.9 158 31.6
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 2.3e-11 73.2 156 31.4
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.3e-11 73.2 167 32.3
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.3e-11 73.2 147 32.7
FvH4_5g19730 Fragaria vesca HOM05D001578 ORTHO05D001207 3.0e-11 72.8 163 30.7
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.1e-11 72.0 148 32.4
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 6.6e-11 71.6 173 30.1
TPR.G25409 Trifolium pratense HOM05D001578 ORTHO05D001207 6.6e-11 71.6 176 29.0
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 8.6e-11 71.2 169 30.8
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.6e-11 71.2 152 33.6
Lj1g0019408 Lotus japonicus HOM05D001578 ORTHO05D001207 1.1e-10 70.9 167 27.5
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 1.1e-10 70.9 163 29.4
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-10 70.9 160 33.8
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 1.5e-10 70.5 142 35.2
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.5e-10 70.5 150 32.0
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.5e-10 70.5 154 33.8
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.9e-10 70.1 164 31.1
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.5e-10 69.7 160 31.2
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 2.5e-10 69.7 174 31.0
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 4.3e-10 68.9 165 31.5
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 4.3e-10 68.9 152 36.2
Rhsim04G0241400 Rhododendron simsii HOM05D001578 ORTHO05D001207 5.6e-10 68.6 114 36.0
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 5.6e-10 68.6 152 35.5
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 7.3e-10 68.2 166 29.5
vmacro15637 Vaccinium macrocarpon HOM05D000074 ORTHO05D001262 7.3e-10 68.2 164 34.8
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 1.6e-09 67.0 150 31.3
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 1.6e-09 67.0 143 28.7
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 2.1e-09 66.6 158 30.4
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 2.1e-09 66.6 158 30.4
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.8e-09 66.2 151 28.5
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 2.8e-09 66.2 167 28.7
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 2.8e-09 66.2 173 29.5
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 2.8e-09 66.2 167 28.7
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 2.8e-09 66.2 173 29.5
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.8e-09 66.2 171 28.7
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 2.8e-09 66.2 141 30.5
Aa31LG10G5830 Aethionema arabicum HOM05D001578 ORTHO05D001207 3.6e-09 65.9 134 31.3
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.6e-09 65.9 148 31.1
Rhsim02G0073200 Rhododendron simsii HOM05D035665 ORTHO05D001207 3.6e-09 65.9 154 29.9
Prupe.3G007800 Prunus persica HOM05D001445 ORTHO05D001207 4.7e-09 65.5 163 27.6
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 4.7e-09 65.5 178 28.7
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 6.2e-09 65.1 158 29.7
Actinidia13347 Actinidia chinensis HOM05D001578 ORTHO05D001207 8.1e-09 64.7 130 30.8
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 8.1e-09 64.7 173 31.8
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 8.1e-09 64.7 167 28.7
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 8.1e-09 64.7 152 32.2
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 8.1e-09 64.7 148 31.1
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 8.1e-09 64.7 148 31.1
MBI18_g25092_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D005233 8.1e-09 64.7 165 29.7
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 1.1e-08 64.3 149 30.2
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 1.4e-08 63.9 174 28.7
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.4e-08 63.9 152 31.6
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 1.8e-08 63.5 141 31.2
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 1.8e-08 63.5 151 30.5
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 2.4e-08 63.2 166 27.7
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.4e-08 63.2 171 28.1
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.4e-08 63.2 171 28.1
Peaxi162Scf00126g00017 Petunia axillaris HOM05D003146 ORTHO05D001819 2.4e-08 63.2 143 28.0
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 2.4e-08 63.2 147 31.3
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 3.1e-08 62.8 143 32.2
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 4.0e-08 62.4 144 31.2
SalBow8G1966 Salvia bowleyana HOM05D001578 ORTHO05D001207 4.0e-08 62.4 162 30.2
SalBow8G3310 Salvia bowleyana HOM05D001578 ORTHO05D001207 4.0e-08 62.4 162 30.2
TAR627G1144 Trochodendron aralioides HOM05D000317 ORTHO05D000032 4.0e-08 62.4 134 29.1
Actinidia18466 Actinidia chinensis HOM05D001578 ORTHO05D001207 6.8e-08 61.6 143 34.3
BcaB04g20862 Brassica carinata HOM05D001578 ORTHO05D001207 6.8e-08 61.6 150 31.3
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 6.8e-08 61.6 142 28.9
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 8.9e-08 61.2 137 32.1
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 8.9e-08 61.2 137 32.1
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 8.9e-08 61.2 171 29.8
CARHR092400 Cardamine hirsuta HOM05D009524 ORTHO05D001207 8.9e-08 61.2 163 27.0
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 8.9e-08 61.2 150 30.0
Rhsim01G0111900 Rhododendron simsii HOM05D001578 ORTHO05D001207 8.9e-08 61.2 158 32.3
CANSAT21G0723 Cannabis sativa HOM05D001445 ORTHO05D001261 1.2e-07 60.8 173 30.1
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 1.2e-07 60.8 149 30.2
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 1.2e-07 60.8 169 27.2
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.5e-07 60.5 155 29.0
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 1.5e-07 60.5 142 29.6
CARHR092390 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.6e-07 59.7 141 31.9
MBI13_g00568_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D001819 2.6e-07 59.7 150 31.3
Phvul.003G116500 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.6e-07 59.7 151 26.5
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 3.4e-07 59.3 161 28.0
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.4e-07 58.9 162 31.5
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 4.4e-07 58.9 149 29.5
Lj1g0016642 Lotus japonicus HOM05D001578 ORTHO05D001207 4.4e-07 58.9 153 28.8
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 5.8e-07 58.5 108 35.2
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 9.9e-07 57.8 142 28.9
Cfa006647 Carpinus fangiana HOM05D003556 ORTHO05D003404 9.9e-07 57.8 168 28.6
arahy.Tifrunner.gnm1.ann1.2R90TF Arachis hypogaea HOM05D000961 ORTHO05D001207 1.3e-06 57.4 165 27.3
Dinv18323 Davidia involucrata HOM05D000034 ORTHO05D000277 1.3e-06 57.4 116 31.9
MD03G1250000 Malus domestica HOM05D001578 ORTHO05D001207 1.3e-06 57.4 146 30.8
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 1.3e-06 57.4 160 27.5
Rhsim03G0038300 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.3e-06 57.4 105 34.3
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.7e-06 57.0 170 28.8
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.2e-06 56.6 136 26.5
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 2.9e-06 56.2 144 30.6
PGSC0003DMG400040362 Solanum tuberosum HOM05D003146 ORTHO05D001819 2.9e-06 56.2 166 29.5
CARHR287460 Cardamine hirsuta HOM05D004113 ORTHO05D005233 3.8e-06 55.8 139 29.5
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 3.8e-06 55.8 168 28.6
TPR.G25399 Trifolium pratense HOM05D001578 ORTHO05D001207 3.8e-06 55.8 172 29.7
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 4.9e-06 55.5 118 32.2
CARHR278590 Cardamine hirsuta HOM05D004113 ORTHO05D005233 4.9e-06 55.5 118 32.2
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 4.9e-06 55.5 149 28.2
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 4.9e-06 55.5 141 29.1
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 4.9e-06 55.5 130 30.8
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 6.4e-06 55.1 120 30.0
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 6.4e-06 55.1 142 28.9
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 6.4e-06 55.1 138 29.0
MD03G1248700 Malus domestica HOM05D001578 ORTHO05D001207 6.4e-06 55.1 146 30.8
MD03G1249600 Malus domestica HOM05D001578 ORTHO05D001207 6.4e-06 55.1 136 31.6
MD13G1150300 Malus domestica HOM05D001578 ORTHO05D001207 6.4e-06 55.1 135 33.3
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 6.4e-06 55.1 169 27.2
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 8.4e-06 54.7 149 27.5
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 8.4e-06 54.7 135 29.6


User provided reference genes

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