Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.4e-204 716.1 355 100.0
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.2e-191 672.2 381 89.2
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 9.2e-161 570.5 365 78.4
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 2.8e-157 558.9 359 78.0
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.6e-144 516.5 350 73.1
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 1.0e-143 513.8 349 73.1
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 1.0e-143 513.8 349 73.1
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 1.3e-138 496.9 357 69.7
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.4e-138 494.6 359 70.2
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.9e-137 493.0 358 67.6
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 1.9e-137 493.0 364 67.9
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.2e-137 491.9 359 69.9
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 5.4e-137 491.5 348 72.7
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.8e-136 487.6 361 69.3
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 8.1e-133 477.6 361 67.9
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.1e-132 477.2 360 67.5
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.8e-132 476.5 351 67.8
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 6.9e-132 474.6 349 68.5
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.5e-131 473.4 349 66.8
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 2.0e-131 473.0 360 67.8
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.4e-131 472.2 351 67.2
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 3.4e-131 472.2 351 67.2
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 7.6e-131 471.1 361 67.6
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.3e-130 470.3 361 67.6
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 1.7e-130 469.9 348 67.2
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 2.9e-130 469.2 343 68.5
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 4.9e-130 468.4 359 66.9
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.4e-130 467.6 347 69.5
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 8.4e-130 467.6 346 68.2
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 8.4e-130 467.6 360 66.1
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 1.1e-129 467.2 347 67.7
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 1.9e-129 466.5 361 67.6
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 3.5e-128 462.2 358 66.5
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 7.9e-128 461.1 361 66.8
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.8e-127 459.9 363 63.6
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 3.0e-127 459.1 360 65.8
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.1e-126 457.2 360 65.0
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 1.6e-125 453.4 367 64.6
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 1.6e-125 453.4 367 62.7
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.1e-125 453.0 347 66.3
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 2.8e-125 452.6 352 65.9
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 1.4e-124 450.3 347 65.7
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 1.2e-123 447.2 367 62.7
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 1.2e-123 447.2 367 62.7
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 2.0e-123 446.4 349 65.0
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 7.6e-123 444.5 366 62.3
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.9e-123 444.1 359 65.7
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 1.3e-122 443.7 349 64.8
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 2.9e-122 442.6 347 64.6
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 6.4e-122 441.4 363 62.5
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 5.5e-121 438.3 349 61.9
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.2e-120 437.2 347 65.4
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 1.6e-120 436.8 357 62.7
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 7.9e-120 434.5 371 63.1
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 3.9e-119 432.2 351 64.4
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 6.7e-119 431.4 352 63.6
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 1.1e-118 430.6 350 63.1
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.5e-118 430.3 372 61.0
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 1.3e-117 427.2 332 64.2
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.2e-117 424.9 359 62.7
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 1.1e-116 424.1 363 63.1
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 3.1e-116 422.5 352 61.9
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 4.0e-116 422.2 361 60.7
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 8.4e-114 414.5 358 59.5
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.9e-113 413.3 348 58.3
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 2.5e-113 412.9 348 58.6
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 3.2e-113 412.5 348 58.0
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 4.2e-113 412.1 349 61.6
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.5e-113 411.8 375 57.6
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 4.6e-112 408.7 210 95.7
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 2.3e-111 406.4 376 57.2
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 3.0e-111 406.0 349 60.5
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 3.9e-111 405.6 359 59.9
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 5.1e-111 405.2 352 60.2
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 8.7e-111 404.4 352 59.7
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 8.7e-111 404.4 350 59.7
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 4.3e-110 402.1 359 59.1
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 5.7e-110 401.7 357 59.7
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 1.3e-109 400.6 359 59.1
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 8.2e-109 397.9 328 61.6
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 1.8e-108 396.7 359 58.2
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 4.1e-108 395.6 347 58.2
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 6.5e-106 388.3 357 59.1
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 6.5e-106 388.3 369 56.4
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 7.2e-105 384.8 366 56.6
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 7.9e-104 381.3 370 56.2
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 2.3e-103 379.8 340 58.2
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 3.3e-102 375.9 349 55.6
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 5.7e-102 375.2 332 60.2
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 5.7e-102 375.2 333 59.2
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 7.4e-102 374.8 333 59.5
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.3e-101 374.0 333 59.5
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.3e-98 364.0 333 57.1
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.7e-98 363.6 358 55.6
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 6.5e-90 335.1 253 62.8
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 3.2e-89 332.8 275 60.0
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 1.2e-88 330.9 349 51.6
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 2.0e-83 313.5 350 49.7
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 6.1e-80 302.0 238 65.5
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 1.4e-79 300.8 225 64.9
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 1.6e-75 287.3 352 44.9
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 5.5e-73 278.9 277 53.1
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 8.0e-72 275.0 164 77.4
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 7.7e-67 258.5 308 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 3.3e-65 253.1 371 38.5
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.3e-61 238.8 216 61.6
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 6.3e-61 238.8 218 58.3
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.1e-60 236.1 216 61.6
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.6e-59 234.2 216 59.7
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 5.2e-55 219.2 204 58.8
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 2.2e-53 213.8 147 72.8
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 1.7e-45 187.6 235 47.2
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 4.9e-45 186.0 396 30.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.1e-44 183.0 120 72.5
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 1.2e-43 181.4 140 60.7
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.0e-43 179.1 210 50.5
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 7.1e-36 155.6 167 45.5
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-22 111.3 64 82.8
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-20 104.4 64 76.6
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-17 94.7 64 75.0
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 9.0e-15 85.5 156 38.5
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 2.9e-13 80.5 264 27.7
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 1.4e-12 78.2 56 67.9
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 1.9e-12 77.8 106 41.5
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 5.5e-12 76.3 52 65.4
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 64.2
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 64.2
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 64.2
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 8.7e-10 68.9 50 66.0
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 5.8e-06 56.2 71 42.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 7.6e-06 55.8 49 55.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 7.6e-06 55.8 49 55.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 7.6e-06 55.8 49 55.1


User provided reference genes

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